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HMS
Hybrid
Motif
Sampler
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HMS (hybrid motif sampler) implements a novel computational algorithm specifically designed for transcription factor binding sites (TFBS) motif discovery using ChIP-Seq data. HMS combines stochastic sampling with determinstic greedy search to achieve rapid and accurate motif pattern identification. In addition, it can identify non-ignorable inter-position dependency inside TFBS motifs. The program is written in C++, and both source code and linux executable are availiable for download.
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Download program |
Download the latest version and the source code of HMS. [March, 2010]
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Download datasets |
Download ChIP-Seq and ChIP-chip datasets.
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Download PSWM |
Download position specific weight matrix (PSWM) from de novo motif searching using ChIP-Seq data.
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Documentation |
Includes the user manual, manuscript and supplementary material describing HMS.
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Update & Bug Log |
Log of updates, bugs and fixes. Also has the previous versions of the program.
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Register
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If you use HMS, please register with us. It helps us to send you updates and bug-fixes.
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Contact
For bug report, questions or comments, please contact Ming Hu (hming@umich.edu).
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