
The following parameters are available.  Ones with "[]" are in effect:

Input Parameters
 --file [testFile.txt], --baseComposition [ON], --disableSeqIDCheck, --quiet,
                --params [ON], --minReadLen [10], --maxErrors [10]
   Space Type : --baseSpace [ON], --colorSpace, --auto
       Errors : --ignoreErrors, --printableErrors [100]

ERROR on Line 2: Invalid character ('.') in base sequence.
ERROR on Line 2: Invalid character ('0') in base sequence.
ERROR on Line 2: Invalid character ('1') in base sequence.
ERROR on Line 2: Invalid character ('2') in base sequence.
ERROR on Line 2: Invalid character ('3') in base sequence.
ERROR on Line 11: Invalid character ('1') in base sequence.
ERROR on Line 11: Invalid character ('2') in base sequence.
ERROR on Line 11: Invalid character ('3') in base sequence.
ERROR on Line 11: Invalid character ('.') in base sequence.
ERROR on Line 11: Invalid character ('0') in base sequence.

Base Composition Statistics:
Read Index	%A	%C	%G	%T	%N	Total Reads At Index
         0   100.00    0.00    0.00    0.00    0.00	3
         1     0.00  100.00    0.00    0.00    0.00	2
         2     0.00    0.00    0.00  100.00    0.00	2
         3     0.00    0.00  100.00    0.00    0.00	2
         4    50.00    0.00    0.00    0.00   50.00	2
         5    50.00   50.00    0.00    0.00    0.00	2
         6     0.00   50.00    0.00   50.00    0.00	2
         7     0.00    0.00    0.00   50.00   50.00	2
         8    50.00    0.00    0.00    0.00   50.00	2
         9     0.00   50.00   50.00    0.00    0.00	2
        10     0.00    0.00    0.00  100.00    0.00	1
        11     0.00    0.00    0.00    0.00  100.00	1
        12     0.00    0.00  100.00    0.00    0.00	1
        13   100.00    0.00    0.00    0.00    0.00	1
        14   100.00    0.00    0.00    0.00    0.00	1
        15     0.00  100.00    0.00    0.00    0.00	1

Finished processing testFile.txt with 11 lines containing 3 sequences.
There were a total of 10 errors.
Returning: 1 : FASTQ_INVALID
