
The following parameters are available.  Ones with "[]" are in effect:

Input Parameters
 --file [testFile.txt], --baseComposition [ON], --disableSeqIDCheck, --quiet,
                --params [ON], --minReadLen [10], --maxErrors [-1]
   Space Type : --baseSpace [ON], --colorSpace, --auto
       Errors : --ignoreErrors, --printableErrors [100]

ERROR on Line 2: Invalid character ('.') in base sequence.
ERROR on Line 2: Invalid character ('0') in base sequence.
ERROR on Line 2: Invalid character ('1') in base sequence.
ERROR on Line 2: Invalid character ('2') in base sequence.
ERROR on Line 2: Invalid character ('3') in base sequence.
ERROR on Line 11: Invalid character ('1') in base sequence.
ERROR on Line 11: Invalid character ('2') in base sequence.
ERROR on Line 11: Invalid character ('3') in base sequence.
ERROR on Line 11: Invalid character ('.') in base sequence.
ERROR on Line 11: Invalid character ('0') in base sequence.
ERROR on Line 11: Invalid character ('3') in base sequence.
ERROR on Line 11: Invalid character ('2') in base sequence.
ERROR on Line 11: Invalid character ('1') in base sequence.
ERROR on Line 11: Invalid character ('.') in base sequence.
ERROR on Line 11: Invalid character ('0') in base sequence.
ERROR on Line 11: Invalid character ('1') in base sequence.
ERROR on Line 11: Invalid character ('1') in base sequence.
ERROR on Line 25: The sequence identifier line was too short.
ERROR on Line 29: First line of a sequence does not begin with @
ERROR on Line 33: No Sequence Identifier specified before the comment.
ERROR on Line 37: No Sequence Identifier specified before the comment.
ERROR on Line 41: Repeated Sequence Identifier: Valid at Lines 1 and 41
ERROR on Line 46: Invalid character ('H') in base sequence.
ERROR on Line 46: Invalid character ('0') in base sequence.
ERROR on Line 47: Invalid character ('B') in base sequence.
ERROR on Line 47: Invalid character ('Z') in base sequence.
ERROR on Line 52: Raw Sequence is shorter than the min read length: 3 < 10
ERROR on Line 56: Looking for continuation of Raw Sequence or '+' instead found a blank line, assuming it was part of Raw Sequence.
ERROR on Line 57: Looking for continuation of Raw Sequence or '+' instead found a blank line, assuming it was part of Raw Sequence.
ERROR on Line 63: Invalid character (' ') in quality string.
ERROR on Line 64: Invalid character (' ') in quality string.
ERROR on Line 77: Quality string length (12) does not equal raw sequence length (10)
ERROR on Line 88: Sequence Identifier on '+' line does not equal the one on the '@' line.
ERROR on Line 91: Invalid character ('0') in base sequence.
ERROR on Line 91: Invalid character ('1') in base sequence.
ERROR on Line 91: Invalid character ('2') in base sequence.
ERROR on Line 91: Invalid character ('3') in base sequence.
ERROR on Line 91: Invalid character ('.') in base sequence.
ERROR on Line 91: Invalid character ('0') in base sequence.
ERROR on Line 91: Invalid character ('3') in base sequence.
ERROR on Line 91: Invalid character ('2') in base sequence.
ERROR on Line 91: Invalid character ('1') in base sequence.
ERROR on Line 91: Invalid character ('.') in base sequence.
ERROR on Line 91: Invalid character ('0') in base sequence.
ERROR on Line 91: Invalid character ('1') in base sequence.
ERROR on Line 91: Invalid character ('1') in base sequence.
ERROR on Line 95: Reached the end of the file without a '+' line.
ERROR on Line 95: Incomplete Sequence, missing Quality String.

Base Composition Statistics:
Read Index	%A	%C	%G	%T	%N	Total Reads At Index
         0   100.00    0.00    0.00    0.00    0.00	20
         1     5.26   94.74    0.00    0.00    0.00	19
         2     5.26    0.00    0.00   94.74    0.00	19
         3     0.00    0.00   94.44    0.00    5.56	18
         4    50.00   38.89    0.00    0.00   11.11	18
         5    52.94   47.06    0.00    0.00    0.00	17
         6     0.00   50.00    0.00   50.00    0.00	18
         7     0.00    0.00   38.89   11.11   50.00	18
         8    44.44    0.00    5.56    0.00   50.00	18
         9     0.00   88.24   11.76    0.00    0.00	17
        10    11.11    0.00    0.00   88.89    0.00	9
        11     0.00    0.00    0.00    0.00  100.00	8
        12     0.00    0.00  100.00    0.00    0.00	8
        13   100.00    0.00    0.00    0.00    0.00	4
        14    33.33   66.67    0.00    0.00    0.00	3
        15     0.00   33.33    0.00   66.67    0.00	3
        16     0.00    0.00  100.00    0.00    0.00	2
        17   100.00    0.00    0.00    0.00    0.00	2
        18     0.00  100.00    0.00    0.00    0.00	2
        19     0.00    0.00    0.00  100.00    0.00	2
        20     0.00    0.00    0.00    0.00  100.00	2
        21   100.00    0.00    0.00    0.00    0.00	2
        22     0.00  100.00    0.00    0.00    0.00	2
        23     0.00    0.00    0.00  100.00    0.00	2
        24     0.00    0.00    0.00    0.00  100.00	2
        25     0.00    0.00  100.00    0.00    0.00	2

Finished processing testFile.txt with 95 lines containing 21 sequences.
There were a total of 48 errors.
Returning: 1 : FASTQ_INVALID
