
The following parameters are available.  Ones with "[]" are in effect:

Input Parameters
 --file [testFile.txt], --baseComposition [ON], --disableSeqIDCheck, --quiet,
                --params [ON], --minReadLen [10], --maxErrors [-1]
   Space Type : --baseSpace, --colorSpace [ON], --auto
       Errors : --ignoreErrors, --printableErrors [5]

ERROR on Line 2: Invalid character ('C') in base sequence.
ERROR on Line 2: Invalid character ('T') in base sequence.
ERROR on Line 2: Invalid character ('G') in base sequence.
ERROR on Line 2: Invalid character ('N') in base sequence.
ERROR on Line 2: Invalid character ('a') in base sequence.

Base Composition Statistics:
Read Index	%A	%C	%G	%T	%N	Total Reads At Index
         0   100.00    0.00    0.00    0.00    0.00	20
         1     0.00  100.00    0.00    0.00    0.00	2
         2     0.00    0.00  100.00    0.00    0.00	2
         3     0.00    0.00    0.00  100.00    0.00	2
         4     0.00    0.00    0.00    0.00  100.00	2
         5   100.00    0.00    0.00    0.00    0.00	2
         6     0.00    0.00    0.00  100.00    0.00	2
         7     0.00    0.00  100.00    0.00    0.00	2
         8     0.00  100.00    0.00    0.00    0.00	2
         9    33.33    0.00    0.00    0.00   66.67	3
        10    66.67    0.00    0.00    0.00   33.33	3
        11    33.33   66.67    0.00    0.00    0.00	3
        12     0.00  100.00    0.00    0.00    0.00	3
        13     0.00    0.00  100.00    0.00    0.00	1
        14     0.00    0.00    0.00  100.00    0.00	1
        15 No Valid Bases found.
        16 No Valid Bases found.
        17 No Valid Bases found.
        18 No Valid Bases found.
        19 No Valid Bases found.
        20 No Valid Bases found.
        21 No Valid Bases found.
        22 No Valid Bases found.
        23 No Valid Bases found.
        24 No Valid Bases found.
        25 No Valid Bases found.

Finished processing testFile.txt with 95 lines containing 21 sequences.
There were a total of 235 errors.
Returning: 1 : FASTQ_INVALID
