Trait Marker Allele Rsq pTest pNull Freq1 Freq0 Chisq LOD PValue disease1 rs111 T 1.042 0.6109 0.6691 0.6159 0.7104 28.7253 6.23763 8.34048e-08 disease1 rs222 T 1.099 0.7687 0.7929 0.7712 0.8180 6.35919 1.38088 0.0116775 disease1 rs333 T 1.042 0.6109 0.6691 0.6159 0.7104 28.7253 6.23763 8.34048e-08 disease2 rs111 T 1.042 0.7159 0.6691 0.7104 0.6159 16.1459 3.50603 5.86467e-05 disease2 rs222 T 1.099 0.8208 0.7929 0.8180 0.7712 7.27079 1.57883 0.00700851 disease2 rs333 T 1.042 0.7159 0.6691 0.7104 0.6159 16.1459 3.50603 5.86467e-05