MQLS method implemented by Liming Liang 2008.

Reference: Thornton and McPeek AJHG 81:321-337.

The following parameters are in effect:
                     Data File :    mqlsdose.dat (-dname)
                 Pedigree File :    mqlsdose.ped (-pname)
                   output File : output_mqlsdose.txt (-oname)
                        filter :           1.000 (-f99.999)
                    prevalence :           0.050 (-k99.999)
                   random seed :          123456 (-s9999)
        Use empirical variance :              ON (-e[+|-])

Dosage Options
   Inferred Dosage : --dosage [MACH.dose], --info [MACH.info]

Empirical variance for dosage is used.
The pedigree file has 567 families and 2216 individuals.
The dosage data have 3 markers and 1293 imputed individuals.
Trait: disease1 has 660 cases and 632 controls.
Trait: disease2 has 632 cases and 660 controls.
All done. Output write to:output_mqlsdose.txt