BaseAsciiMap Class Reference
List of all members.
Public Types |
| enum | SPACE_TYPE { UNKNOWN,
BASE_SPACE,
COLOR_SPACE
} |
Public Member Functions |
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void | setBaseMapType (SPACE_TYPE spaceType) |
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int | getBaseIndex (const char &letter) |
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SPACE_TYPE | getSpaceType () |
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void | setNumPrimerBases (int numPrimerBases) |
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void | resetPrimerCount () |
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void | resetBaseMapType () |
Static Public Attributes |
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static const int | baseAIndex = 000 |
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static const int | baseTIndex = 001 |
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static const int | baseCIndex = 002 |
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static const int | baseGIndex = 003 |
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static const int | baseNIndex = 004 |
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static const int | baseXIndex = 005 |
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static const char | int2base [] = "ACGTNMXXXXXXXXXX" |
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static const char | int2colorSpace [] = "0123NXXXXXXXXXXX" |
| static unsigned char | base2complement [] |
Detailed Description
Definition at line 23 of file BaseAsciiMap.h.
Member Data Documentation
unsigned char BaseAsciiMap::base2complement [static] |
Initial value:
"NNNNNNNNNNNNNNNN"
"NNNNNNNNNNNNNNNN"
"NNNNNNNNNNNNNNNN"
"0123NNNNNNNNNNNN"
"NTNGNNNCNNNNNNNN"
"NNNNANNNNNNNNNNN"
"NTNGNNNCNNNNNNNN"
"NNNNANNNNNNNNNNN"
"NNNNNNNNNNNNNNNN"
"NNNNNNNNNNNNNNNN"
"NNNNNNNNNNNNNNNN"
"NNNNNNNNNNNNNNNN"
"NNNNNNNNNNNNNNNN"
"NNNNNNNNNNNNNNNN"
"NNNNNNNNNNNNNNNN"
"NNNNNNNNNNNNNNNN"
Definition at line 39 of file BaseAsciiMap.h.
The documentation for this class was generated from the following files:
