BamIndex Member List

This is the complete list of members for BamIndex, including all inherited members.
BamIndex() (defined in BamIndex)BamIndex
getChunksForRegion(int32_t refID, int32_t start, int32_t end, SortedChunkList &chunkList)BamIndex
getMaxOffset() const (defined in BamIndex)BamIndex
getMinOffsetFromLinearIndex(int32_t refID, uint32_t position) const (defined in BamIndex)BamIndex
getNumMappedReads(int32_t refID)BamIndex
getNumRefs() const BamIndex
getNumUnMappedReads(int32_t refID)BamIndex
getReferenceMinMax(int32_t refID, uint64_t &minOffset, uint64_t &maxOffset) const BamIndex
printIndex(int32_t refID, bool summary=false)BamIndex
readIndex(const char *filename)BamIndex
REF_ID_ALLBamIndex [static]
REF_ID_UNMAPPEDBamIndex [static]
resetIndex()BamIndex
UNKNOWN_NUM_READSBamIndex [static]
~BamIndex() (defined in BamIndex)BamIndex
Generated on Tue Aug 23 18:19:06 2011 for libStatGen Software by  doxygen 1.6.3