closeFile() (defined in FastQFile) | FastQFile | |
disableMessages() (defined in FastQFile) | FastQFile | |
disableSeqIDCheck() (defined in FastQFile) | FastQFile | |
enableMessages() (defined in FastQFile) | FastQFile | |
enableSeqIDCheck() (defined in FastQFile) | FastQFile | |
FastQFile(int minReadLength=10, int numPrintableErrors=20) (defined in FastQFile) | FastQFile | |
getSpaceType() (defined in FastQFile) | FastQFile | [inline] |
isEof() (defined in FastQFile) | FastQFile | |
isOpen() (defined in FastQFile) | FastQFile | |
keepReadingFile() (defined in FastQFile) | FastQFile | |
myPlusLine (defined in FastQFile) | FastQFile | |
myQualityString (defined in FastQFile) | FastQFile | |
myRawSequence (defined in FastQFile) | FastQFile | |
mySequenceIdentifier (defined in FastQFile) | FastQFile | |
mySequenceIdLine (defined in FastQFile) | FastQFile | |
openFile(const char *fileName, BaseAsciiMap::SPACE_TYPE spaceType=BaseAsciiMap::UNKNOWN) (defined in FastQFile) | FastQFile | |
readFastQSequence() (defined in FastQFile) | FastQFile | |
setMaxErrors(int maxErrors) (defined in FastQFile) | FastQFile | |
validateFastQFile(const String &filename, bool printBaseComp, BaseAsciiMap::SPACE_TYPE spaceType) (defined in FastQFile) | FastQFile |