, including all inherited members.
| addComment(const char *comment) (defined in SamFileHeader) | SamFileHeader | |
| addHD(SamHeaderHD *hd) (defined in SamFileHeader) | SamFileHeader | |
| addHeaderLine(const char *type, const char *tag, const char *value) (defined in SamFileHeader) | SamFileHeader | |
| addHeaderLine(const char *headerLine) (defined in SamFileHeader) | SamFileHeader | |
| addPG(SamHeaderPG *pg) (defined in SamFileHeader) | SamFileHeader | |
| addReferenceInfo(const char *referenceSequenceName, int32_t referenceSequenceLength) (defined in SamFileHeader) | SamFileHeader | |
| addRG(SamHeaderRG *rg) (defined in SamFileHeader) | SamFileHeader | |
| addSQ(SamHeaderSQ *sq) (defined in SamFileHeader) | SamFileHeader | |
| copy(const SamFileHeader &header) (defined in SamFileHeader) | SamFileHeader | |
| generateReferenceInfo() (defined in SamFileHeader) | SamFileHeader | |
| getHD() (defined in SamFileHeader) | SamFileHeader | |
| getHDTagValue(const char *tag) (defined in SamFileHeader) | SamFileHeader | |
| getHeaderString(std::string &header) const (defined in SamFileHeader) | SamFileHeader | |
| getNextComment() (defined in SamFileHeader) | SamFileHeader | |
| getNextHeaderLine(std::string &headerLine) (defined in SamFileHeader) | SamFileHeader | |
| getNextHeaderRecord(uint32_t &index, SamHeaderRecord::SamHeaderRecordType headerType) (defined in SamFileHeader) | SamFileHeader | |
| getNextHeaderRecord() (defined in SamFileHeader) | SamFileHeader | |
| getNextPGRecord() (defined in SamFileHeader) | SamFileHeader | |
| getNextRGRecord() (defined in SamFileHeader) | SamFileHeader | |
| getNextSQRecord() (defined in SamFileHeader) | SamFileHeader | |
| getNumPGs() (defined in SamFileHeader) | SamFileHeader | |
| getNumRGs() (defined in SamFileHeader) | SamFileHeader | |
| getNumSQs() (defined in SamFileHeader) | SamFileHeader | |
| getPG(const char *id) (defined in SamFileHeader) | SamFileHeader | |
| getPGTagValue(const char *tag, const char *id) (defined in SamFileHeader) | SamFileHeader | |
| getReferenceID(const String &referenceName, bool addID=false) (defined in SamFileHeader) | SamFileHeader | |
| getReferenceID(const char *referenceName, bool addID=false) (defined in SamFileHeader) | SamFileHeader | |
| getReferenceInfo() const (defined in SamFileHeader) | SamFileHeader | |
| getReferenceLabel(int id) const (defined in SamFileHeader) | SamFileHeader | |
| getRG(const char *id) (defined in SamFileHeader) | SamFileHeader | |
| getRGTagValue(const char *tag, const char *id) (defined in SamFileHeader) | SamFileHeader | |
| getSortOrder() (defined in SamFileHeader) | SamFileHeader | |
| getSQ(const char *name) (defined in SamFileHeader) | SamFileHeader | |
| getSQTagValue(const char *tag, const char *name) (defined in SamFileHeader) | SamFileHeader | |
| getTagSO() (defined in SamFileHeader) | SamFileHeader | |
| operator=(const SamFileHeader &header) (defined in SamFileHeader) | SamFileHeader | |
| removeHD() (defined in SamFileHeader) | SamFileHeader | |
| removePG(const char *id) (defined in SamFileHeader) | SamFileHeader | |
| removeRG(const char *id) (defined in SamFileHeader) | SamFileHeader | |
| removeSQ(const char *name) (defined in SamFileHeader) | SamFileHeader | |
| resetCommentIter() (defined in SamFileHeader) | SamFileHeader | |
| resetHeader() (defined in SamFileHeader) | SamFileHeader | |
| resetHeaderRecordIter() (defined in SamFileHeader) | SamFileHeader | |
| resetPGRecordIter() (defined in SamFileHeader) | SamFileHeader | |
| resetRGRecordIter() (defined in SamFileHeader) | SamFileHeader | |
| resetSQRecordIter() (defined in SamFileHeader) | SamFileHeader | |
| SamFileHeader() (defined in SamFileHeader) | SamFileHeader | |
| SamFileHeader(const SamFileHeader &header) (defined in SamFileHeader) | SamFileHeader | |
| setHDTag(const char *tag, const char *value) (defined in SamFileHeader) | SamFileHeader | |
| setHeaderFromBamFile(IFILE filePtr) (defined in SamFileHeader) | SamFileHeader | |
| setPGTag(const char *tag, const char *value, const char *id) (defined in SamFileHeader) | SamFileHeader | |
| setRGTag(const char *tag, const char *value, const char *id) (defined in SamFileHeader) | SamFileHeader | |
| setSQTag(const char *tag, const char *value, const char *name) (defined in SamFileHeader) | SamFileHeader | |
| ~SamFileHeader() (defined in SamFileHeader) | SamFileHeader | |
