SamFilter Member List
This is the complete list of members for
SamFilter, including all inherited members.
| clipOnMismatchThreshold(SamRecord &record, GenomeSequence &refSequence, double mismatchThreshold) (defined in SamFilter) | SamFilter | [static] |
| CLIPPED enum value (defined in SamFilter) | SamFilter | |
| FILTERED enum value (defined in SamFilter) | SamFilter | |
| filterOnMismatchQuality(SamRecord &record, GenomeSequence &refSequence, uint32_t qualityThreshold, uint8_t defaultQualityInt) (defined in SamFilter) | SamFilter | [static] |
| filterRead(SamRecord &record) (defined in SamFilter) | SamFilter | [static] |
| FilterStatus enum name (defined in SamFilter) | SamFilter | |
| NONE enum value (defined in SamFilter) | SamFilter | |
| softClip(SamRecord &record, int32_t numFrontClips, int32_t numBackClips) | SamFilter | [static] |
| softClip(Cigar &oldCigar, int32_t numFrontClips, int32_t numBackClips, int32_t &startPos, CigarRoller &updatedCigar) | SamFilter | [static] |
| sumMismatchQuality(SamRecord &record, GenomeSequence &refSequence, uint8_t defaultQualityInt) (defined in SamFilter) | SamFilter | [static] |
