glfHandler Member List

This is the complete list of members for glfHandler, including all inherited members.

BeginSection(const String &sectionLabel, int sectionLength) (defined in glfHandler)	glfHandler
Close() (defined in glfHandler)	glfHandler
Create(const String &filename) (defined in glfHandler)	glfHandler
currentSection (defined in glfHandler)	glfHandler
data (defined in glfHandler)	glfHandler
endOfSection (defined in glfHandler)	glfHandler
EndSection() (defined in glfHandler)	glfHandler
errorMsg (defined in glfHandler)	glfHandler
GenotypeIndex(int base1, int base2) (defined in glfHandler)	glfHandler	[inline, static]
GetDefaultLikelihoods() (defined in glfHandler)	glfHandler	[inline, static]
GetDefaultLogLikelihoods() (defined in glfHandler)	glfHandler	[inline, static]
GetDepth(int position) (defined in glfHandler)	glfHandler
GetLikelihoods(int position) (defined in glfHandler)	glfHandler
GetLogLikelihoods(int position) (defined in glfHandler)	glfHandler
GetMapQuality(int position) (defined in glfHandler)	glfHandler
GetReference(int position, char defaultBase) (defined in glfHandler)	glfHandler
glfHandler() (defined in glfHandler)	glfHandler
handle (defined in glfHandler)	glfHandler
header (defined in glfHandler)	glfHandler
indelSequence (defined in glfHandler)	glfHandler
isOpen() (defined in glfHandler)	glfHandler
isStub (defined in glfHandler)	glfHandler
label (defined in glfHandler)	glfHandler
likelihoods (defined in glfHandler)	glfHandler
maxPosition (defined in glfHandler)	glfHandler
NextBaseEntry() (defined in glfHandler)	glfHandler
NextEntry() (defined in glfHandler)	glfHandler
NextSection() (defined in glfHandler)	glfHandler
Open(const String &filename) (defined in glfHandler)	glfHandler
OpenStub() (defined in glfHandler)	glfHandler
position (defined in glfHandler)	glfHandler
Rewind() (defined in glfHandler)	glfHandler
sections (defined in glfHandler)	glfHandler
WriteEntry(int outputPosition) (defined in glfHandler)	glfHandler
~glfHandler() (defined in glfHandler)	glfHandler