getBases(int32_t referenceID, uint32_t position, std::vector< ReadBase > &readBases, bool &basesInserted) | SequenceCoverageReader | |
getInsertedBases(int referenceID, uint32_t position, std::vector< ReadInsertion > &readInsertions) (defined in SequenceCoverageReader) | SequenceCoverageReader | |
SequenceCoverageReader(SamFile &samFile) (defined in SequenceCoverageReader) | SequenceCoverageReader | [inline] |
useIndex(bool u=true) (defined in SequenceCoverageReader) | SequenceCoverageReader | [inline] |