SamFlag Member List
This is the complete list of members for
SamFlag, including all inherited members.
| DUPLICATE (defined in SamFlag) | SamFlag | [static] |
| FAILED_QUALITY (defined in SamFlag) | SamFlag | [static] |
| FIRST_READ (defined in SamFlag) | SamFlag | [static] |
| FRAGMENT_INFO (defined in SamFlag) | SamFlag | [static] |
| FRAGMENT_SHIFT (defined in SamFlag) | SamFlag | [static] |
| getFragmentType(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
| isDuplicate(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
| isFirstFragment(uint16_t flag) | SamFlag | [inline, static] |
| isLastFragment(uint16_t flag) | SamFlag | [inline, static] |
| isMapped(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
| isMateMapped(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
| isMateReverse(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
| isMidFragment(uint16_t flag) | SamFlag | [inline, static] |
| isPaired(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
| isProperPair(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
| isQCFailure(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
| isReverse(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
| isUnknownFragment(uint16_t flag) | SamFlag | [inline, static] |
| MATE_REVERSED (defined in SamFlag) | SamFlag | [static] |
| MATE_UNMAPPED (defined in SamFlag) | SamFlag | [static] |
| PAIRED (defined in SamFlag) | SamFlag | [static] |
| PROPER_PAIR (defined in SamFlag) | SamFlag | [static] |
| REVERSE (defined in SamFlag) | SamFlag | [static] |
| SECOND_READ (defined in SamFlag) | SamFlag | [static] |
| SECONDARY_ALIGNMENT (defined in SamFlag) | SamFlag | [static] |
| setDuplicate(uint16_t &flag) | SamFlag | [inline, static] |
| setNotDuplicate(uint16_t &flag) | SamFlag | [inline, static] |
| setUnmapped(uint16_t &flag) | SamFlag | [inline, static] |
| UNMAPPED (defined in SamFlag) | SamFlag | [static] |
