| addEntry(SamRecord &record) | PileupElementBaseQual | [virtual] |
| analyze() | TestPileupElement | [virtual] |
| getChromosome() const | PileupElement | [inline] |
| getRefBase() | PileupElement | |
| getReference() | PileupElement | [inline, protected, static] |
| getRefPosition() const | PileupElement | [inline] |
| PileupElement() | PileupElement | |
| PileupElement(const PileupElement &q) | PileupElement | |
| PileupElementBaseQual() (defined in PileupElementBaseQual) | PileupElementBaseQual | |
| PileupElementBaseQual(const PileupElementBaseQual &q) (defined in PileupElementBaseQual) | PileupElementBaseQual | |
| reset(int32_t refPosition) | PileupElementBaseQual | [virtual] |
| setReference(GenomeSequence *reference) | PileupElement | [static] |
| UNSET_POSITION (defined in PileupElement) | PileupElement | [static] |
| ~PileupElement() | PileupElement | [virtual] |
| ~PileupElementBaseQual() (defined in PileupElementBaseQual) | PileupElementBaseQual | [virtual] |
1.6.3