This is the complete list of members for BamIndex, including all inherited members.

BamIndex() (defined in BamIndex)	BamIndex
getBinsForRegion(uint32_t start, uint32_t end, uint16_t binList[MAX_NUM_BINS]) (defined in IndexBase)	IndexBase	`[protected, static]`
getChunksForRegion(int32_t refID, int32_t start, int32_t end, SortedChunkList &chunkList)	BamIndex
getMaxOffset() const (defined in BamIndex)	BamIndex
getMinOffsetFromLinearIndex(int32_t refID, uint32_t position, uint64_t &minOffset) const (defined in IndexBase)	IndexBase
getNumMappedReads(int32_t refID)	BamIndex
getNumRefs() const	IndexBase
getNumUnMappedReads(int32_t refID)	BamIndex
getReferenceMinMax(int32_t refID, uint64_t &minOffset, uint64_t &maxOffset) const	BamIndex
IndexBase() (defined in IndexBase)	IndexBase
LINEAR_INDEX_SHIFT (defined in IndexBase)	IndexBase	`[protected, static]`
MAX_NUM_BINS (defined in IndexBase)	IndexBase	`[protected, static]`
MAX_POSITION (defined in IndexBase)	IndexBase	`[protected, static]`
myRefs (defined in IndexBase)	IndexBase	`[protected]`
n_ref (defined in IndexBase)	IndexBase	`[protected]`
printIndex(int32_t refID, bool summary=false)	BamIndex
readIndex(const char *filename)	BamIndex	`[virtual]`
REF_ID_ALL	BamIndex	`[static]`
REF_ID_UNMAPPED	BamIndex	`[static]`
resetIndex()	BamIndex	`[virtual]`
UNKNOWN_NUM_READS	BamIndex	`[static]`
~BamIndex() (defined in BamIndex)	BamIndex	`[virtual]`
~IndexBase() (defined in IndexBase)	IndexBase	`[virtual]`