, including all inherited members.
| attemptRecoverySync(bool(*checkSignature)(void *data), int length) (defined in InputFile) | InputFile | [inline] |
| BGZF enum value | InputFile | |
| BGZF_TEST_FILE_SIZE (defined in IFILE_Test) | IFILE_Test | [static] |
| bufferReads(unsigned int bufferSize=DEFAULT_BUFFER_SIZE) | InputFile | [inline] |
| DEFAULT enum value | InputFile | |
| DEFAULT_BUFFER_SIZE (defined in InputFile) | InputFile | [protected, static] |
| disableBuffering() | InputFile | [inline] |
| discardLine() | InputFile | |
| getFileName() const | InputFile | [inline] |
| GZIP enum value | InputFile | |
| ifclose() | InputFile | [inline] |
| ifeof() const | InputFile | [inline] |
| ifgetc() | InputFile | [inline] |
| ifgetline(void *voidBuffer, size_t max) | InputFile | [inline] |
| ifileCompression enum name | InputFile | |
| ifread(void *buffer, unsigned int size) | InputFile | [inline] |
| ifrewind() | InputFile | [inline] |
| ifseek(int64_t offset, int origin) | InputFile | [inline] |
| iftell() | InputFile | [inline] |
| ifwrite(const void *buffer, unsigned int size) | InputFile | [inline] |
| InputFile() | InputFile | [inline] |
| InputFile(const char *filename, const char *mode, InputFile::ifileCompression compressionMode=InputFile::DEFAULT) | InputFile | |
| isOpen() const | InputFile | [inline] |
| myAllocatedBufferSize (defined in InputFile) | InputFile | [protected] |
| myBufferIndex (defined in InputFile) | InputFile | [protected] |
| myCurrentBufferSize (defined in InputFile) | InputFile | [protected] |
| myFileBuffer (defined in InputFile) | InputFile | [protected] |
| myFileName (defined in InputFile) | InputFile | [protected] |
| myFileTypePtr (defined in InputFile) | InputFile | [protected] |
| openFile(const char *filename, const char *mode, InputFile::ifileCompression compressionMode) (defined in InputFile) | InputFile | |
| readFromFile(void *buffer, unsigned int size) (defined in InputFile) | InputFile | [inline, protected] |
| readLine(std::string &line) | InputFile | |
| readTilChar(const std::string &stopChars, std::string &stringRef) | InputFile | |
| readTilChar(const std::string &stopChars) | InputFile | |
| readTilTab(std::string &field) | InputFile | |
| setAttemptRecovery(bool flag=false) | InputFile | [inline] |
| test() (defined in IFILE_Test) | IFILE_Test | |
| TEST_FILE_CONTENTS (defined in IFILE_Test) | IFILE_Test | [static] |
| TEST_FILE_SIZE (defined in IFILE_Test) | IFILE_Test | [static] |
| UNCOMPRESSED enum value | InputFile | |
| ~InputFile() | InputFile | |