This is the complete list of members for TestPileup, including all inherited members.

addAlignmentPosition(int refPosition, SamRecord &record) (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
addElement(TestPileupElement &element, SamRecord &record) (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected, virtual]`
analyzeElement(TestPileupElement &element) (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected, virtual]`
analyzeHead() (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected, virtual]`
flushPileup()	Pileup< TestPileupElement >
flushPileup(int refID, int refPosition) (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected, virtual]`
flushPileup(int refPosition) (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
myAnalyzeFuncPtr (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
myCurrentRefID (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
myElements (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
myRefPtr (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
Pileup(const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >())	Pileup< TestPileupElement >
Pileup(int window, const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >())	Pileup< TestPileupElement >
Pileup(const std::string &refSeqFileName, const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >())	Pileup< TestPileupElement >
Pileup(int window, const std::string &refSeqFileName, const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >())	Pileup< TestPileupElement >
pileupHead (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
pileupPosition(int refPosition) (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
pileupStart (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
pileupTail (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
pileupWindow (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected]`
processAlignment(SamRecord &record)	Pileup< TestPileupElement >	`[virtual]`
processAlignmentRegion(SamRecord &record, int startPos, int endPos, PosList *excludeList=NULL)	Pileup< TestPileupElement >	`[virtual]`
processFile(const std::string &fileName, uint16_t excludeFlag=0x0704, uint16_t includeFlag=0)	Pileup< TestPileupElement >	`[virtual]`
resetElement(TestPileupElement &element, int position) (defined in Pileup< TestPileupElement >)	Pileup< TestPileupElement >	`[protected, virtual]`
testPileupPosition() (defined in TestPileup)	TestPileup
~Pileup()	Pileup< TestPileupElement >	`[virtual]`