FastQFile Class Reference
Collaboration diagram for FastQFile:
Public Member Functions | |
| FastQFile (int minReadLength=10, int numPrintableErrors=20) | |
| void | disableMessages () |
| void | enableMessages () |
| void | disableSeqIDCheck () |
| void | enableSeqIDCheck () |
| void | setMaxErrors (int maxErrors) |
| FastQStatus::Status | openFile (const char *fileName, BaseAsciiMap::SPACE_TYPE spaceType=BaseAsciiMap::UNKNOWN) |
| FastQStatus::Status | closeFile () |
| bool | isOpen () |
| bool | isEof () |
| bool | keepReadingFile () |
| FastQStatus::Status | validateFastQFile (const String &filename, bool printBaseComp, BaseAsciiMap::SPACE_TYPE spaceType) |
| FastQStatus::Status | readFastQSequence () |
| BaseAsciiMap::SPACE_TYPE | getSpaceType () |
Public Attributes | |
| String | myRawSequence |
| String | mySequenceIdLine |
| String | mySequenceIdentifier |
| String | myPlusLine |
| String | myQualityString |
Detailed Description
Definition at line 28 of file FastQFile.h.
The documentation for this class was generated from the following files:
- lib/fastq/FastQFile.h
- lib/fastq/FastQFile.cpp
