PedigreeGlobals Class Reference
Inheritance diagram for PedigreeGlobals:
Collaboration diagram for PedigreeGlobals:
Static Public Member Functions | |
| static int | GetTraitID (const char *name) |
| static int | GetMarkerID (const char *name) |
| static int | GetCovariateID (const char *name) |
| static int | GetAffectionID (const char *name) |
| static int | LookupTrait (const char *name) |
| static int | LookupMarker (const char *name) |
| static int | LookupCovariate (const char *name) |
| static int | LookupAffection (const char *name) |
| static void | GrowMarkerInfo () |
| static MarkerInfo * | GetMarkerInfo (String &name) |
| static MarkerInfo * | GetMarkerInfo (int marker) |
| static int | SortMarkersInMapOrder (IntArray &markers, int chromosome=-1) |
| static void | GetOrderedMarkers (IntArray &markers) |
| static void | FlagMissingMarkers (IntArray &missingMarkers) |
| static bool | MarkerPositionsAvailable () |
| static bool | AlleleFrequenciesAvailable () |
| static void | VerifySexSpecificOrder () |
| static void | LoadAlleleFrequencies (const char *filename, bool required=false) |
| static void | LoadAlleleFrequencies (IFILE &file) |
| static void | LoadMarkerMap (const char *filename, bool filter=false) |
| static void | LoadMarkerMap (IFILE &file, bool filter=false) |
| static void | LoadBasepairMap (const char *filename) |
| static void | LoadBasepairMap (IFILE &file) |
| static void | WriteMapFile (const char *filename) |
| static void | WriteMapFile (FILE *file) |
| static void | WriteFreqFile (const char *filename, bool old_format=false) |
| static void | WriteFreqFile (FILE *file, bool old_format=false) |
| static int | LoadAllele (int marker, String &label) |
| static int | LoadAllele (MarkerInfo *info, String &label) |
Static Public Attributes | |
| static int | traitCount = 0 |
| static int | markerCount = 0 |
| static int | affectionCount = 0 |
| static int | covariateCount = 0 |
| static bool | chromosomeX = false |
| static bool | sexSpecificMap = false |
| static StringArray | traitNames |
| static StringArray | covariateNames |
| static StringArray | affectionNames |
| static StringArray | markerNames |
| static StringIntHash | markerLookup |
| static StringIntHash | traitLookup |
| static StringIntHash | affectionLookup |
| static StringIntHash | covariateLookup |
| static int | markerInfoCount = 0 |
| static int | markerInfoSize = 0 |
| static MarkerInfo ** | markerInfo = NULL |
| static StringHash | markerInfoByName |
| static MarkerInfo ** | markerInfoByInteger = NULL |
Detailed Description
Definition at line 94 of file PedigreeGlobals.h.
The documentation for this class was generated from the following files:
- lib/general/PedigreeGlobals.h
- lib/general/PedigreeGlobals.cpp
