Pileup< PILEUP_TYPE, FUNC_CLASS > Class Template Reference

Collaboration diagram for Pileup< PILEUP_TYPE, FUNC_CLASS >:

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List of all members.

Public Member Functions
	Pileup (const FUNC_CLASS &fp=FUNC_CLASS())
	Pileup (int window, const FUNC_CLASS &fp=FUNC_CLASS())
virtual int	processFile (const std::string &fileName, uint16_t excludeFlag=0x0704, uint16_t includeFlag=0)
virtual void	processAlignment (SamRecord &record)
void	flushPileup ()
Protected Attributes
FUNC_CLASS	myAnalyzeFuncPtr

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Detailed Description

template<class PILEUP_TYPE, class FUNC_CLASS = defaultPileup<PILEUP_TYPE>>
class Pileup< PILEUP_TYPE, FUNC_CLASS >

Definition at line 45 of file Pileup.h.

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The documentation for this class was generated from the following file:

• lib/bam/Pileup.h