Public Types | |
enum | FilterStatus { NONE, CLIPPED, FILTERED } |
Static Public Member Functions | |
static FilterStatus | clipOnMismatchThreshold (SamRecord &record, GenomeSequence &refSequence, double mismatchThreshold) |
static FilterStatus | filterOnMismatchQuality (SamRecord &record, GenomeSequence &refSequence, uint32_t qualityThreshold, uint8_t defaultQualityInt) |
static uint32_t | sumMismatchQuality (SamRecord &record, GenomeSequence &refSequence, uint8_t defaultQualityInt) |
static void | filterRead (SamRecord &record) |
Definition at line 24 of file SamFilter.h.