HPeak - a HMM-based Peak Finder for Next Generation Sequencing Data

HPeak: A HMM-based algorithm for defining read-enriched regions from massive parallel sequencing data

Download HPeak 2.1 package at the following links:

Unix/Linux 64 bit (2.2 MB),
MAC OS (to be available soon),
Windows (to be available soon),
SunOS (to be available soon),

To install additional data required when using the -seq option, please download the human genome sequence files from the UCSC genome site (http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/chromFa.zip), and save all chr**.fa files to the /data/hg18/ directory. (See Install Guide for more details)

Previous version: HPeak 2.0:

Unix/Linux 64 bit (3.9 MB),
MAC OS (3.9 MB),
Windows (to be available soon),
SunOS (to be available soon),

To install additional data required when using the -seq option, please download the human genome sequence files from the UCSC genome site (http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/chromFa.zip), and save all chr**.fa files to the /data/hg18/ directory.(See Install Guide for more details)

Previous version: HPeak 1.1:

Unix/Linux 64 bit (4.0 MB),
MAC OS (4.1 MB),
Windows (4.9 MB),
SunOS (4.4 MB),
Addiitonal data required when using the -ann option (395 MB).

To install additional data required when using the -seq option, please download the human genome sequence files from the UCSC genome site ( http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/chromFa.zip). Visit Install page for detailed downloading and installation

Previous version: HPeak 1.0:

Unix/Linux 64 bit (3.9 MB),
MAC OS (3.9 MB),
Windows (4.9 MB),
SUN Solaris (3.9 MB),

[ HPeak ] | Steve Qin | Chinnaiyan Lab ]