HPeak - a HMM-based Peak Finder for Next Generation Sequencing Data
Description: HPeak, a HMM-based algorithm for defining read-enriched regions from massive parallel sequencing data
Keywords: next generation sequencing, ChIP-Seq, ChIP-on-Chip, Solexa, computational biology, Hidden markov model, peak identification

## HPeak: A HMM-based algorithm for defining read-enriched regions from massive parallel sequencing data

Readme | Install | Home | FAQ | Update

> Download HPeak 2.1 package at the following links:

> Unix/Linux 64 bit (2.2 MB),

> MAC OS (to be available soon), Windows (to be available soon), SunOS (to be available soon),

> To install additional data required when using the -seq option, please download the human genome sequence files from the UCSC genome site (http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/chromFa.zip), and save all chr**.fa files to the /data/hg18/ directory. (See Install Guide for more details)

> Previous version: HPeak 2.0:

> Unix/Linux 64 bit (3.9 MB),

> MAC OS (3.9 MB), Windows (to be available soon), SunOS (to be available soon),

> To install additional data required when using the -seq option, please download the human genome sequence files from the UCSC genome site (http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/chromFa.zip), and save all chr**.fa files to the /data/hg18/ directory.(See Install Guide for more details)

> Previous version: HPeak 1.1:

> Unix/Linux 64 bit (4.0 MB),

> MAC OS (4.1 MB), Windows (4.9 MB), SunOS (4.4 MB), Addiitonal data required when using the -ann option (395 MB).

> To install additional data required when using the -seq option, please download the human genome sequence files from the UCSC genome site ( http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/chromFa.zip). Visit Install page for detailed downloading and installation

> Previous version: HPeak 1.0:

> Unix/Linux 64 bit (3.9 MB),

> MAC OS (3.9 MB), Windows (4.9 MB), SUN Solaris (3.9 MB),

> [ HPeak ] | Steve Qin | Chinnaiyan Lab ]