University of Michigan Center for Statistical 


Global Lipids Genetics Consortium Results

Meta-Analysis Tables

The tables below summarize the results of the meta-analysis of variants genotyped using the exome array in 47,532 East Asian samples to test for association with HDL cholesterol, LDL cholesterol, total cholesterol and triglyceride levels.


Lu X, Peloso GM, Liu DJ, Wu Y, Zhang H, Li J, Tang CS, Dorajoo R, [many additional authors], Kathiresan S, Mohlke KL, Wu T, Sham PC, Gu D, Willer C. Exome chip meta-analysis identifies novel loci and East Asian-specific coding variants contributing to lipid levels and coronary artery disease. Nat Genet (in press).

Result Files

LDL Cholesterol
HDL Cholesterol
Total Cholesterol

EXOME CHIP META-ANALYSIS IN EUROPEANS (N= ~300,000) + EAST ASIANS (N= ~47,000) LDL Cholesterol HDL Cholesterol Triglycerides Total Cholesterol

Columns in Result Files

Column Label Description
SNP_hg18 Marker name in build hg18.
SNP_hg19 Marker name in build hg19.
rsid Marker name in rsid format.
A1 Effect allele.
A2 Other allele.
Beta Effect size.
SE Standard Error for Beta.
N The number of individuals analyzed for this marker.
P-value P-value after doing genomic control.
Freq.A1.1000G.EAS Frequency of allele A1 from 1000G EAS sample.

Using our GLGC data in LocusZoom (

Please e-mail Goncalo Abecasis or Cristen Willer with comments or suggestions.


University of Michigan | School of Public Health | Abecasis Lab