prs_id	slug	legacy_id	legacy_model	prswebprefix	trait_code	trait_name	trait_type	description	cohort	cohort_label	method	gwas_source	reference_label	reference_url	snp_count	p_value	pseudo_r2	brier_score	mse	aauc	aauc_ci	effect_metric	top_effect_1	top_effect_1_ci	top_or_1	top_or_1_ci	top_effect_2	top_effect_2_ci	top_or_2	top_or_2_ci	top_effect_5	top_effect_5_ci	top_or_5	top_or_5_ci	top_effect_10	top_effect_10_ci	top_or_10	top_or_10_ci	top_effect_25	top_effect_25_ci	top_or_25	top_or_25_ci	q1_vs_q2_effect	q1_vs_q2_effect_ci	q1_vs_q2_p_value	q1_vs_q3_effect	q1_vs_q3_effect_ci	q1_vs_q3_p_value	q1_vs_q4_effect	q1_vs_q4_effect_ci	q1_vs_q4_p_value	nominally_significant	reversed_effect_warning	underpowered_warning	upload_to_portal	sex	cases	controls	genome_build	tuning_parameter	weights_external_url	weights_url	phewas_download_url	exclusion_download_url	last_updated
prsweb-phecode145-c3-lip-oral-pharynx-p-5e-05-mgi-20200608	prsweb-phecode145-c3-lip-oral-pharynx-p-5e-05-mgi-20200608	PRSWEB_PHECODE145_C3-LIP-ORAL-PHARYNX_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE145_C3-LIP-ORAL-PHARYNX_P_5e-05_MGI_20200608	145	Malignant neoplasm of lip, oral cavity and pharynx	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	105	0.33	0.000506359	0.0829		0.499	0.477-0.524	OR	2.13	1.14-3.97	2.13	1.14-3.97	1.52	0.912-2.54	1.52	0.912-2.54	1.31	0.919-1.86	1.31	0.919-1.86	1.1	0.839-1.45	1.1	0.839-1.45	1.06	0.871-1.29	1.06	0.871-1.29	1.08	0.85-1.37	0.531	0.92	0.719-1.18	0.509	1.06	0.836-1.35	0.622	False	False	False	False	Both	578	5750	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode145-c3-tonsil-p-5e-05-mgi-20200608	prsweb-phecode145-c3-tonsil-p-5e-05-mgi-20200608	PRSWEB_PHECODE145_C3-TONSIL_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE145_C3-TONSIL_P_5e-05_MGI_20200608	145	Malignant neoplasm of tonsil	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	56	0.84	0.000126158	0.083		0.499	0.475-0.525	OR	0.759	0.288-2	0.759	0.288-2	0.727	0.36-1.47	0.727	0.36-1.47	0.691	0.438-1.09	0.691	0.438-1.09	0.854	0.632-1.15	0.854	0.632-1.15	1.08	0.892-1.31	1.08	0.892-1.31	1.21	0.948-1.54	0.127	1.01	0.786-1.3	0.939	1.15	0.906-1.47	0.246	False	False	False	False	Both	578	5750	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode145-c3-lip-oral-pharynx-p-5e-06-mgi-20200608	prsweb-phecode145-c3-lip-oral-pharynx-p-5e-06-mgi-20200608	PRSWEB_PHECODE145_C3-LIP-ORAL-PHARYNX_P_5e-06_MGI_20200608	P_5e-06	PRSWEB_PHECODE145_C3-LIP-ORAL-PHARYNX_P_5e-06_MGI_20200608	145	Malignant neoplasm of lip, oral cavity and pharynx	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-06)	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	21	0.017	0.000181997	0.0829		0.506	0.482-0.531	OR	1.79	0.918-3.49	1.79	0.918-3.49	1.51	0.904-2.52	1.51	0.904-2.52	1.31	0.918-1.86	1.31	0.918-1.86	1.32	1.02-1.71	1.32	1.02-1.71	1.22	1.01-1.47	1.22	1.01-1.47	0.964	0.75-1.24	0.777	1.09	0.855-1.39	0.48	1.25	0.982-1.58	0.0709	True	False	False	False	Both	578	5750	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode145-ukbb-saige-hrc-x145-p-5e-06-mgi-20200608	prsweb-phecode145-ukbb-saige-hrc-x145-p-5e-06-mgi-20200608	PRSWEB_PHECODE145_UKBB-SAIGE-HRC-X145_P_5e-06_MGI_20200608	P_5e-06	PRSWEB_PHECODE145_UKBB-SAIGE-HRC-X145_P_5e-06_MGI_20200608	145	Cancer of mouth	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	Fixed threshold (5e-06)	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	11	0.91	0.00014177	0.083		0.482	0.459-0.507	OR	0.943	0.389-2.28	0.943	0.389-2.28	0.997	0.54-1.84	0.997	0.54-1.84	0.877	0.579-1.33	0.877	0.579-1.33	1.09	0.828-1.44	1.09	0.828-1.44	1.01	0.826-1.22	1.01	0.826-1.22	0.929	0.729-1.18	0.553	0.997	0.785-1.27	0.98	0.976	0.768-1.24	0.839	False	False	False	False	Both	578	5750	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode145-c3-lip-oral-pharynx-pt-mgi-20200608	prsweb-phecode145-c3-lip-oral-pharynx-pt-mgi-20200608	PRSWEB_PHECODE145_C3-LIP-ORAL-PHARYNX_PT_MGI_20200608	P&T	PRSWEB_PHECODE145_C3-LIP-ORAL-PHARYNX_PT_MGI_20200608	145	Malignant neoplasm of lip, oral cavity and pharynx	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	P&T	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	45	0.014	0.00158866	0.0829		0.519	0.498-0.542	OR	1.26	0.585-2.73	1.26	0.585-2.73	1.07	0.591-1.93	1.07	0.591-1.93	1.09	0.746-1.59	1.09	0.746-1.59	1.37	1.06-1.76	1.37	1.06-1.76	1.15	0.947-1.39	1.15	0.947-1.39	0.965	0.748-1.24	0.783	1.22	0.958-1.55	0.108	1.21	0.953-1.54	0.117	True	False	False	True	Both	578	5750	GRCh37/hg19	P<=2e-05	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000357/ScoringFiles/	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000357/ScoringFiles/	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE145_C3-LIP-ORAL-PHARYNX_PT_MGI_20200608/all.tsv	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE145_C3-LIP-ORAL-PHARYNX_PT_MGI_20200608/exclusion.tsv	2020-06-08
prsweb-phecode145-ukbb-saige-hrc-x145-pt-mgi-20200608	prsweb-phecode145-ukbb-saige-hrc-x145-pt-mgi-20200608	PRSWEB_PHECODE145_UKBB-SAIGE-HRC-X145_PT_MGI_20200608	P&T	PRSWEB_PHECODE145_UKBB-SAIGE-HRC-X145_PT_MGI_20200608	145	Cancer of mouth	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	P&T	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	21	0.27	0.000835988	0.0829		0.506	0.483-0.529	OR	0.774	0.294-2.04	0.774	0.294-2.04	0.822	0.421-1.6	0.822	0.421-1.6	0.737	0.471-1.15	0.737	0.471-1.15	0.941	0.703-1.26	0.941	0.703-1.26	1.03	0.846-1.25	1.03	0.846-1.25	1.32	1.03-1.7	0.0283	1.38	1.08-1.77	0.0108	1.27	0.989-1.64	0.0611	False	False	False	False	Both	578	5750	GRCh37/hg19	P<=1.26e-05					2020-06-08
prsweb-phecode145-c3-lip-oral-pharynx-prs-cs-mgi-20200608	prsweb-phecode145-c3-lip-oral-pharynx-prs-cs-mgi-20200608	PRSWEB_PHECODE145_C3-LIP-ORAL-PHARYNX_PRS-CS_MGI_20200608	PRS-CS	PRSWEB_PHECODE145_C3-LIP-ORAL-PHARYNX_PRS-CS_MGI_20200608	145	Malignant neoplasm of lip, oral cavity and pharynx	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	PRS-CS	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	1092985	0.12	9.54967e-06	0.0829		0.518	0.494-0.544	OR	1.28	0.595-2.78	1.28	0.595-2.78	0.993	0.538-1.83	0.993	0.538-1.83	1.28	0.897-1.83	1.28	0.897-1.83	1.25	0.963-1.63	1.25	0.963-1.63	1.08	0.893-1.32	1.08	0.893-1.32	1.08	0.847-1.39	0.519	1.14	0.897-1.46	0.278	1.15	0.904-1.47	0.252	False	False	False	False	Both	578	5750	GRCh37/hg19	auto					2020-06-08
prsweb-phecode145-c3-tonsil-prs-cs-mgi-20200608	prsweb-phecode145-c3-tonsil-prs-cs-mgi-20200608	PRSWEB_PHECODE145_C3-TONSIL_PRS-CS_MGI_20200608	PRS-CS	PRSWEB_PHECODE145_C3-TONSIL_PRS-CS_MGI_20200608	145	Malignant neoplasm of tonsil	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	PRS-CS	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	950488	0.94	0.000611489	0.083		0.501	0.476-0.526	OR	0.935	0.386-2.26	0.935	0.386-2.26	1.17	0.658-2.07	1.17	0.658-2.07	0.869	0.574-1.32	0.869	0.574-1.32	0.993	0.747-1.32	0.993	0.747-1.32	0.989	0.812-1.21	0.989	0.812-1.21	1.08	0.844-1.37	0.557	1.08	0.846-1.37	0.541	1.04	0.813-1.33	0.764	False	False	False	False	Both	578	5750	GRCh37/hg19	auto					2020-06-08
prsweb-phecode145-ukbb-saige-hrc-x145-prs-cs-mgi-20200608	prsweb-phecode145-ukbb-saige-hrc-x145-prs-cs-mgi-20200608	PRSWEB_PHECODE145_UKBB-SAIGE-HRC-X145_PRS-CS_MGI_20200608	PRS-CS	PRSWEB_PHECODE145_UKBB-SAIGE-HRC-X145_PRS-CS_MGI_20200608	145	Cancer of mouth	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	PRS-CS	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	1119238	0.012	0.000159023	0.0829		0.528	0.502-0.552	OR	1.63	0.812-3.26	1.63	0.812-3.26	1.88	1.18-3.02	1.88	1.18-3.02	1.54	1.11-2.15	1.54	1.11-2.15	1.33	1.03-1.73	1.33	1.03-1.73	1.16	0.962-1.41	1.16	0.962-1.41	1.24	0.969-1.59	0.087	1.2	0.934-1.54	0.153	1.34	1.04-1.71	0.021	True	False	False	True	Both	578	5750	GRCh37/hg19	auto	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000358/ScoringFiles/	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000358/ScoringFiles/	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE145_UKBB-SAIGE-HRC-X145_PRS-CS_MGI_20200608/all.tsv	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE145_UKBB-SAIGE-HRC-X145_PRS-CS_MGI_20200608/exclusion.tsv	2020-06-08
prsweb-phecode145-ukbb-saige-hrc-x145-lassosum-mgi-20200608	prsweb-phecode145-ukbb-saige-hrc-x145-lassosum-mgi-20200608	PRSWEB_PHECODE145_UKBB-SAIGE-HRC-X145_LASSOSUM_MGI_20200608	Lassosum	PRSWEB_PHECODE145_UKBB-SAIGE-HRC-X145_LASSOSUM_MGI_20200608	145	Cancer of mouth	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	lassosum	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	816404	0.24	0.0021591	0.0829		0.51	0.485-0.535	OR	1.11	0.487-2.51	1.11	0.487-2.51	0.898	0.474-1.7	0.898	0.474-1.7	1.16	0.806-1.68	1.16	0.806-1.68	1.13	0.859-1.48	1.13	0.859-1.48	1.17	0.969-1.42	1.17	0.969-1.42	1.17	0.913-1.49	0.217	1.02	0.794-1.31	0.873	1.25	0.983-1.59	0.0681	False	False	False	False	Both	578	5750	GRCh37/hg19	s=1;Lambda=0.02976					2020-06-08