prs_id	slug	legacy_id	legacy_model	prswebprefix	trait_code	trait_name	trait_type	description	cohort	cohort_label	method	gwas_source	reference_label	reference_url	snp_count	p_value	pseudo_r2	brier_score	mse	aauc	aauc_ci	effect_metric	top_effect_1	top_effect_1_ci	top_or_1	top_or_1_ci	top_effect_2	top_effect_2_ci	top_or_2	top_or_2_ci	top_effect_5	top_effect_5_ci	top_or_5	top_or_5_ci	top_effect_10	top_effect_10_ci	top_or_10	top_or_10_ci	top_effect_25	top_effect_25_ci	top_or_25	top_or_25_ci	q1_vs_q2_effect	q1_vs_q2_effect_ci	q1_vs_q2_p_value	q1_vs_q3_effect	q1_vs_q3_effect_ci	q1_vs_q3_p_value	q1_vs_q4_effect	q1_vs_q4_effect_ci	q1_vs_q4_p_value	nominally_significant	reversed_effect_warning	underpowered_warning	upload_to_portal	sex	cases	controls	genome_build	tuning_parameter	weights_external_url	weights_url	phewas_download_url	exclusion_download_url	last_updated
prsweb-phecode159-2-20001-1019-p-5e-05-mgi-20200608	prsweb-phecode159-2-20001-1019-p-5e-05-mgi-20200608	PRSWEB_PHECODE159.2_20001-1019_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE159.2_20001-1019_P_5e-05_MGI_20200608	159.2	Cancer code, self-reported: small intestine/small bowel cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	59	0.51	0.000514694	0.0826		0.501	0.435-0.568	OR	4.18	1.11-15.8	4.18	1.11-15.8	3.68	1.32-10.3	3.68	1.32-10.3	2.31	1.05-5.08	2.31	1.05-5.08	1.27	0.623-2.6	1.27	0.623-2.6	1.1	0.649-1.86	1.1	0.649-1.86	1.57	0.809-3.04	0.183	0.971	0.479-1.97	0.936	1.32	0.677-2.58	0.414	False	False	False	False	Both	75	750	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode159-2-c17-p-5e-05-mgi-20200608	prsweb-phecode159-2-c17-p-5e-05-mgi-20200608	PRSWEB_PHECODE159.2_C17_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE159.2_C17_P_5e-05_MGI_20200608	159.2	Diagnoses - main ICD10: C17 Malignant neoplasm of small intestine	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	UKB GWAS (ICD10)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	41	0.63	8.83575e-07	0.0826		0.507	0.446-0.568	OR	1.73	0.276-10.8	1.73	0.276-10.8	1.62	0.405-6.48	1.62	0.405-6.48	1.45	0.573-3.69	1.45	0.573-3.69	0.84	0.366-1.93	0.84	0.366-1.93	0.827	0.47-1.45	0.827	0.47-1.45	1.1	0.566-2.14	0.778	1.32	0.695-2.52	0.393	0.965	0.485-1.92	0.92	False	False	False	False	Both	75	750	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode159-2-c3-small-intestine-p-5e-05-mgi-20200608	prsweb-phecode159-2-c3-small-intestine-p-5e-05-mgi-20200608	PRSWEB_PHECODE159.2_C3-SMALL-INTESTINE_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE159.2_C3-SMALL-INTESTINE_P_5e-05_MGI_20200608	159.2	Malignant neoplasm of small intestine	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	51	0.97	0.000131059	0.0827		0.508	0.44-0.577	OR	0	0-0	0	0-0	0.306	0.0175-5.38	0.306	0.0175-5.38	1.15	0.422-3.14	1.15	0.422-3.14	0.972	0.444-2.13	0.972	0.444-2.13	1.25	0.749-2.09	1.25	0.749-2.09	0.526	0.255-1.08	0.081	0.991	0.53-1.85	0.977	1.04	0.561-1.91	0.911	False	False	False	False	Both	75	750	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode159-2-ukbb-saige-hrc-x159-2-p-5e-05-mgi-20200608	prsweb-phecode159-2-ukbb-saige-hrc-x159-2-p-5e-05-mgi-20200608	PRSWEB_PHECODE159.2_UKBB-SAIGE-HRC-X159.2_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE159.2_UKBB-SAIGE-HRC-X159.2_P_5e-05_MGI_20200608	159.2	Malignant neoplasm of small intestine, including duodenum	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	90	0.92	0.00403767	0.0826		0.503	0.435-0.574	OR	1.71	0.27-10.8	1.71	0.27-10.8	0.938	0.167-5.29	0.938	0.167-5.29	0.629	0.172-2.3	0.629	0.172-2.3	1.44	0.72-2.88	1.44	0.72-2.88	1.34	0.805-2.22	1.34	0.805-2.22	0.651	0.325-1.31	0.227	0.908	0.478-1.73	0.768	1.07	0.581-1.97	0.826	False	False	False	False	Both	75	750	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode159-2-20001-1019-p-5e-06-mgi-20200608	prsweb-phecode159-2-20001-1019-p-5e-06-mgi-20200608	PRSWEB_PHECODE159.2_20001-1019_P_5e-06_MGI_20200608	P_5e-06	PRSWEB_PHECODE159.2_20001-1019_P_5e-06_MGI_20200608	159.2	Cancer code, self-reported: small intestine/small bowel cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-06)	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	11	0.31	0.00790327	0.0825		0.518	0.445-0.597	OR	5.41	1.6-18.3	5.41	1.6-18.3	2.95	0.984-8.87	2.95	0.984-8.87	2.33	1.06-5.12	2.33	1.06-5.12	2.27	1.24-4.15	2.27	1.24-4.15	1.5	0.912-2.47	1.5	0.912-2.47	0.685	0.343-1.37	0.283	0.722	0.37-1.41	0.339	1.2	0.658-2.2	0.548	False	False	False	False	Both	75	750	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode159-2-c3-small-intestine-p-5e-06-mgi-20200608	prsweb-phecode159-2-c3-small-intestine-p-5e-06-mgi-20200608	PRSWEB_PHECODE159.2_C3-SMALL-INTESTINE_P_5e-06_MGI_20200608	P_5e-06	PRSWEB_PHECODE159.2_C3-SMALL-INTESTINE_P_5e-06_MGI_20200608	159.2	Malignant neoplasm of small intestine	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-06)	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	7	0.087	0.000191755	0.0824		0.549	0.478-0.616	OR	0	0-0	0	0-0	0.981	0.177-5.43	0.981	0.177-5.43	2.33	1.06-5.11	2.33	1.06-5.11	1.59	0.818-3.11	1.59	0.818-3.11	1.33	0.799-2.21	1.33	0.799-2.21	1.13	0.553-2.32	0.734	1.58	0.803-3.13	0.185	1.56	0.795-3.06	0.196	False	False	False	False	Both	75	750	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode159-2-ukbb-saige-hrc-x159-2-p-5e-06-mgi-20200608	prsweb-phecode159-2-ukbb-saige-hrc-x159-2-p-5e-06-mgi-20200608	PRSWEB_PHECODE159.2_UKBB-SAIGE-HRC-X159.2_P_5e-06_MGI_20200608	P_5e-06	PRSWEB_PHECODE159.2_UKBB-SAIGE-HRC-X159.2_P_5e-06_MGI_20200608	159.2	Malignant neoplasm of small intestine, including duodenum	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	Fixed threshold (5e-06)	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	10	0.34	0.000155551	0.0826		0.512	0.45-0.579	OR	0	0-0	0	0-0	0.309	0.0174-5.49	0.309	0.0174-5.49	2.05	0.896-4.68	2.05	0.896-4.68	1.96	1.03-3.7	1.96	1.03-3.7	1.33	0.804-2.22	1.33	0.804-2.22	1.31	0.667-2.58	0.432	1.07	0.526-2.18	0.853	1.55	0.801-3	0.193	False	False	False	False	Both	75	750	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode159-2-20001-1019-pt-mgi-20200608	prsweb-phecode159-2-20001-1019-pt-mgi-20200608	PRSWEB_PHECODE159.2_20001-1019_PT_MGI_20200608	P&T	PRSWEB_PHECODE159.2_20001-1019_PT_MGI_20200608	159.2	Cancer code, self-reported: small intestine/small bowel cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	P&T	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	11	0.31	0.00790327	0.0825		0.518	0.445-0.597	OR	5.41	1.6-18.3	5.41	1.6-18.3	2.95	0.984-8.87	2.95	0.984-8.87	2.33	1.06-5.12	2.33	1.06-5.12	2.27	1.24-4.15	2.27	1.24-4.15	1.5	0.912-2.47	1.5	0.912-2.47	0.685	0.343-1.37	0.283	0.722	0.37-1.41	0.339	1.2	0.658-2.2	0.548	False	False	False	False	Both	75	750	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode159-2-c3-small-intestine-pt-mgi-20200608	prsweb-phecode159-2-c3-small-intestine-pt-mgi-20200608	PRSWEB_PHECODE159.2_C3-SMALL-INTESTINE_PT_MGI_20200608	P&T	PRSWEB_PHECODE159.2_C3-SMALL-INTESTINE_PT_MGI_20200608	159.2	Malignant neoplasm of small intestine	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	P&T	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	25	0.23	0.00238821	0.0825		0.534	0.468-0.602	OR	1.73	0.277-10.8	1.73	0.277-10.8	0.957	0.172-5.33	0.957	0.172-5.33	1.16	0.425-3.18	1.16	0.425-3.18	1.43	0.717-2.85	1.43	0.717-2.85	1.11	0.653-1.87	1.11	0.653-1.87	1.49	0.731-3.03	0.273	1.8	0.908-3.58	0.0919	1.56	0.776-3.14	0.212	False	False	False	False	Both	75	750	GRCh37/hg19	P<=2e-05					2020-06-08
prsweb-phecode159-2-ukbb-saige-hrc-x159-2-pt-mgi-20200608	prsweb-phecode159-2-ukbb-saige-hrc-x159-2-pt-mgi-20200608	PRSWEB_PHECODE159.2_UKBB-SAIGE-HRC-X159.2_PT_MGI_20200608	P&T	PRSWEB_PHECODE159.2_UKBB-SAIGE-HRC-X159.2_PT_MGI_20200608	159.2	Malignant neoplasm of small intestine, including duodenum	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	P&T	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	73	0.91	0.0049134	0.0826		0.504	0.432-0.577	OR	1.73	0.273-11	1.73	0.273-11	0.934	0.166-5.26	0.934	0.166-5.26	0.893	0.292-2.73	0.893	0.292-2.73	1.13	0.534-2.38	1.13	0.534-2.38	1.1	0.65-1.87	1.1	0.65-1.87	0.724	0.364-1.44	0.357	0.974	0.516-1.84	0.936	0.97	0.517-1.82	0.925	False	False	False	False	Both	75	750	GRCh37/hg19	P<=3.98e-05					2020-06-08
prsweb-phecode159-2-c17-prs-cs-mgi-20200608	prsweb-phecode159-2-c17-prs-cs-mgi-20200608	PRSWEB_PHECODE159.2_C17_PRS-CS_MGI_20200608	PRS-CS	PRSWEB_PHECODE159.2_C17_PRS-CS_MGI_20200608	159.2	Diagnoses - main ICD10: C17 Malignant neoplasm of small intestine	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	PRS-CS	UKB GWAS (ICD10)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	903170	0.65	0.00226702	0.0826		0.509	0.44-0.581	OR	1.79	0.285-11.3	1.79	0.285-11.3	1.63	0.411-6.45	1.63	0.411-6.45	0.892	0.292-2.73	0.892	0.292-2.73	1.43	0.716-2.85	1.43	0.716-2.85	1.1	0.65-1.88	1.1	0.65-1.88	1.13	0.598-2.12	0.713	0.821	0.415-1.62	0.571	1.12	0.587-2.15	0.726	False	False	False	False	Both	75	750	GRCh37/hg19	auto					2020-06-08
prsweb-phecode159-2-ukbb-saige-hrc-x159-2-prs-cs-mgi-20200608	prsweb-phecode159-2-ukbb-saige-hrc-x159-2-prs-cs-mgi-20200608	PRSWEB_PHECODE159.2_UKBB-SAIGE-HRC-X159.2_PRS-CS_MGI_20200608	PRS-CS	PRSWEB_PHECODE159.2_UKBB-SAIGE-HRC-X159.2_PRS-CS_MGI_20200608	159.2	Malignant neoplasm of small intestine, including duodenum	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	PRS-CS	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	1119238	0.87	2.70225e-05	0.0826		0.493	0.428-0.561	OR	2.96	0.656-13.4	2.96	0.656-13.4	2.29	0.675-7.73	2.29	0.675-7.73	2.02	0.884-4.6	2.02	0.884-4.6	0.978	0.445-2.15	0.978	0.445-2.15	1.17	0.698-1.98	1.17	0.698-1.98	1.56	0.822-2.95	0.174	0.725	0.341-1.54	0.402	1.29	0.665-2.51	0.45	False	False	False	False	Both	75	750	GRCh37/hg19	auto					2020-06-08
prsweb-phecode159-2-20001-1019-lassosum-mgi-20200608	prsweb-phecode159-2-20001-1019-lassosum-mgi-20200608	PRSWEB_PHECODE159.2_20001-1019_LASSOSUM_MGI_20200608	Lassosum	PRSWEB_PHECODE159.2_20001-1019_LASSOSUM_MGI_20200608	159.2	Cancer code, self-reported: small intestine/small bowel cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	lassosum	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	1487304	0.066	0.00540912	0.0824		0.574	0.515-0.64	OR	0	0-0	0	0-0	0.316	0.0182-5.49	0.316	0.0182-5.49	0.631	0.172-2.31	0.631	0.172-2.31	1.13	0.534-2.39	1.13	0.534-2.39	1.18	0.7-1.98	1.18	0.7-1.98	1.73	0.803-3.75	0.161	2.56	1.24-5.3	0.0112	2.02	0.968-4.23	0.0611	False	False	False	False	Both	75	750	GRCh37/hg19	s=0.2;Lambda=0.004281					2020-06-08
prsweb-phecode159-2-c3-small-intestine-lassosum-mgi-20200608	prsweb-phecode159-2-c3-small-intestine-lassosum-mgi-20200608	PRSWEB_PHECODE159.2_C3-SMALL-INTESTINE_LASSOSUM_MGI_20200608	Lassosum	PRSWEB_PHECODE159.2_C3-SMALL-INTESTINE_LASSOSUM_MGI_20200608	159.2	Malignant neoplasm of small intestine	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	lassosum	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	2552539	0.92	0.00689325	0.0826		0.504	0.442-0.569	OR	0	0-0	0	0-0	0.309	0.0175-5.44	0.309	0.0175-5.44	0.122	0.00759-1.96	0.122	0.00759-1.96	0.431	0.145-1.28	0.431	0.145-1.28	1.03	0.603-1.75	1.03	0.603-1.75	1.01	0.53-1.94	0.969	0.896	0.462-1.74	0.745	1	0.525-1.92	0.99	False	False	False	False	Both	75	750	GRCh37/hg19	s=0.2;Lambda=0.001					2020-06-08