prs_id slug legacy_id legacy_model prswebprefix trait_code trait_name trait_type description cohort cohort_label method gwas_source reference_label reference_url snp_count p_value pseudo_r2 brier_score mse aauc aauc_ci effect_metric top_effect_1 top_effect_1_ci top_or_1 top_or_1_ci top_effect_2 top_effect_2_ci top_or_2 top_or_2_ci top_effect_5 top_effect_5_ci top_or_5 top_or_5_ci top_effect_10 top_effect_10_ci top_or_10 top_or_10_ci top_effect_25 top_effect_25_ci top_or_25 top_or_25_ci q1_vs_q2_effect q1_vs_q2_effect_ci q1_vs_q2_p_value q1_vs_q3_effect q1_vs_q3_effect_ci q1_vs_q3_p_value q1_vs_q4_effect q1_vs_q4_effect_ci q1_vs_q4_p_value nominally_significant reversed_effect_warning underpowered_warning upload_to_portal sex cases controls genome_build tuning_parameter weights_external_url weights_url phewas_download_url exclusion_download_url last_updated prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-p-5e-05-ukb-20200608 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-p-5e-05-ukb-20200608 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-05_UKB_20200608 P_5e-05 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-05_UKB_20200608 172.22 Squamous cell carcinoma;Cutaneous squamous cell carcinoma Binary 19 unique SNPs UKB UK Biobank Fixed threshold (5e-05) GWAS Catalog (2019-05-03) 26829030;26908436;27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=26829030+26908436+27424798 18 1.6e-57 0.0110016 0.0822 0.558 0.551-0.566 OR 1.6 1.27-2.01 1.6 1.27-2.01 1.69 1.44-1.98 1.69 1.44-1.98 1.63 1.46-1.81 1.63 1.46-1.81 1.52 1.41-1.65 1.52 1.41-1.65 1.43 1.35-1.52 1.43 1.35-1.52 1.23 1.13-1.35 1.96e-06 1.49 1.37-1.62 2.44e-20 1.76 1.62-1.91 1.17e-41 True False False False Both 5450 54568 GRCh37/hg19 P<=5e-05 2020-06-08 prsweb-phecode172-22-cscc-chahal-p-5e-05-ukb-20200608 prsweb-phecode172-22-cscc-chahal-p-5e-05-ukb-20200608 PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-05_UKB_20200608 P_5e-05 PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-05_UKB_20200608 172.22 Squamous cell carcinoma Binary known and novel UKB UK Biobank Fixed threshold (5e-05) Chahal HS et al. 2018 27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=27424798 10 4.3e-94 0.0139988 0.082 0.57 0.562-0.578 OR 1.75 1.4-2.18 1.75 1.4-2.18 1.79 1.53-2.09 1.79 1.53-2.09 1.83 1.65-2.02 1.83 1.65-2.02 1.77 1.64-1.91 1.77 1.64-1.91 1.66 1.57-1.76 1.66 1.57-1.76 1.18 1.08-1.29 0.000286 1.47 1.35-1.6 1.23e-19 1.99 1.84-2.15 1.14e-63 True False False False Both 5450 54568 GRCh37/hg19 P<=5e-05 2020-06-08 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-p-5e-06-ukb-20200608 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-p-5e-06-ukb-20200608 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-06_UKB_20200608 P_5e-06 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-06_UKB_20200608 172.22 Squamous cell carcinoma;Cutaneous squamous cell carcinoma Binary 19 unique SNPs UKB UK Biobank Fixed threshold (5e-06) GWAS Catalog (2019-05-03) 26829030;26908436;27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=26829030+26908436+27424798 17 1.7e-66 0.011696 0.0822 0.562 0.555-0.571 OR 1.65 1.32-2.07 1.65 1.32-2.07 1.61 1.37-1.9 1.61 1.37-1.9 1.65 1.48-1.83 1.65 1.48-1.83 1.59 1.47-1.73 1.59 1.47-1.73 1.49 1.4-1.58 1.49 1.4-1.58 1.32 1.21-1.44 5.26e-10 1.52 1.4-1.66 7.5e-22 1.89 1.74-2.06 1.77e-51 True False False False Both 5450 54568 GRCh37/hg19 P<=5e-06 2020-06-08 prsweb-phecode172-22-cscc-chahal-p-5e-06-ukb-20200608 prsweb-phecode172-22-cscc-chahal-p-5e-06-ukb-20200608 PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-06_UKB_20200608 P_5e-06 PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-06_UKB_20200608 172.22 Squamous cell carcinoma Binary known and novel UKB UK Biobank Fixed threshold (5e-06) Chahal HS et al. 2018 27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=27424798 10 4.3e-94 0.0139988 0.082 0.57 0.562-0.578 OR 1.75 1.4-2.18 1.75 1.4-2.18 1.79 1.53-2.09 1.79 1.53-2.09 1.83 1.65-2.02 1.83 1.65-2.02 1.77 1.64-1.91 1.77 1.64-1.91 1.66 1.57-1.76 1.66 1.57-1.76 1.18 1.08-1.29 0.000286 1.47 1.35-1.6 1.23e-19 1.99 1.84-2.15 1.14e-63 True False False False Both 5450 54568 GRCh37/hg19 P<=5e-06 2020-06-08 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-p-5e-07-ukb-20200608 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-p-5e-07-ukb-20200608 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-07_UKB_20200608 P_5e-07 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-07_UKB_20200608 172.22 Squamous cell carcinoma;Cutaneous squamous cell carcinoma Binary 19 unique SNPs UKB UK Biobank Fixed threshold (5e-07) GWAS Catalog (2019-05-03) 26829030;26908436;27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=26829030+26908436+27424798 14 4.1e-93 0.0148476 0.082 0.575 0.567-0.582 OR 2.19 1.79-2.67 2.19 1.79-2.67 1.89 1.62-2.2 1.89 1.62-2.2 1.82 1.65-2.02 1.82 1.65-2.02 1.71 1.58-1.85 1.71 1.58-1.85 1.62 1.53-1.72 1.62 1.53-1.72 1.34 1.22-1.46 2.92e-10 1.67 1.53-1.82 6.99e-31 2.15 1.97-2.33 7.5e-71 True False False False Both 5450 54568 GRCh37/hg19 P<=5e-07 2020-06-08 prsweb-phecode172-22-cscc-chahal-p-5e-07-ukb-20200608 prsweb-phecode172-22-cscc-chahal-p-5e-07-ukb-20200608 PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-07_UKB_20200608 P_5e-07 PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-07_UKB_20200608 172.22 Squamous cell carcinoma Binary known and novel UKB UK Biobank Fixed threshold (5e-07) Chahal HS et al. 2018 27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=27424798 10 4.3e-94 0.0139988 0.082 0.57 0.562-0.578 OR 1.75 1.4-2.18 1.75 1.4-2.18 1.79 1.53-2.09 1.79 1.53-2.09 1.83 1.65-2.02 1.83 1.65-2.02 1.77 1.64-1.91 1.77 1.64-1.91 1.66 1.57-1.76 1.66 1.57-1.76 1.18 1.08-1.29 0.000286 1.47 1.35-1.6 1.23e-19 1.99 1.84-2.15 1.14e-63 True False False False Both 5450 54568 GRCh37/hg19 P<=5e-07 2020-06-08 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-p-5e-09-ukb-20200608 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-p-5e-09-ukb-20200608 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-09_UKB_20200608 P_5e-09 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-09_UKB_20200608 172.22 Squamous cell carcinoma;Cutaneous squamous cell carcinoma Binary 19 unique SNPs UKB UK Biobank Fixed threshold (5e-09) GWAS Catalog (2019-05-03) 26829030;26908436;27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=26829030+26908436+27424798 7 2.1e-85 0.0131787 0.082 0.57 0.563-0.578 OR 1.86 1.5-2.3 1.86 1.5-2.3 1.97 1.69-2.29 1.97 1.69-2.29 1.79 1.62-1.99 1.79 1.62-1.99 1.67 1.55-1.81 1.67 1.55-1.81 1.57 1.48-1.67 1.57 1.48-1.67 1.27 1.16-1.39 1.88e-07 1.61 1.48-1.75 5.33e-28 2 1.85-2.18 6.66e-61 True False False False Both 5450 54568 GRCh37/hg19 P<=5e-09 2020-06-08 prsweb-phecode172-22-cscc-chahal-p-5e-09-ukb-20200608 prsweb-phecode172-22-cscc-chahal-p-5e-09-ukb-20200608 PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-09_UKB_20200608 P_5e-09 PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-09_UKB_20200608 172.22 Squamous cell carcinoma Binary known and novel UKB UK Biobank Fixed threshold (5e-09) Chahal HS et al. 2018 27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=27424798 5 7.9e-97 0.013663 0.0819 0.569 0.561-0.577 OR 2.13 1.73-2.61 2.13 1.73-2.61 2.06 1.78-2.39 2.06 1.78-2.39 1.93 1.75-2.14 1.93 1.75-2.14 1.82 1.69-1.97 1.82 1.69-1.97 1.62 1.53-1.71 1.62 1.53-1.71 1.31 1.2-1.44 5.04e-09 1.47 1.36-1.58 9.7e-24 2.05 1.91-2.21 5.07e-79 True False False False Both 5450 54568 GRCh37/hg19 P<=5e-09 2020-06-08 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-p-5e-08-ukb-20200608 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-p-5e-08-ukb-20200608 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-08_UKB_20200608 P_5e-08 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-08_UKB_20200608 172.22 Squamous cell carcinoma;Cutaneous squamous cell carcinoma Binary 19 unique SNPs UKB UK Biobank GWAS Hits GWAS Catalog (2019-05-03) 26829030;26908436;27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=26829030+26908436+27424798 13 4.2e-89 0.0143482 0.082 0.573 0.564-0.58 OR 2.13 1.74-2.61 2.13 1.74-2.61 1.85 1.58-2.16 1.85 1.58-2.16 1.78 1.6-1.97 1.78 1.6-1.97 1.66 1.53-1.8 1.66 1.53-1.8 1.62 1.52-1.71 1.62 1.52-1.71 1.4 1.28-1.53 3.03e-13 1.63 1.49-1.78 4.32e-28 2.14 1.97-2.33 4.38e-70 True False False True Both 5450 54568 GRCh37/hg19 P<=5e-08 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000462/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000462/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-08_UKB_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_P_5e-08_UKB_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-22-cscc-chahal-p-5e-08-ukb-20200608 prsweb-phecode172-22-cscc-chahal-p-5e-08-ukb-20200608 PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-08_UKB_20200608 P_5e-08 PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-08_UKB_20200608 172.22 Squamous cell carcinoma Binary known and novel UKB UK Biobank GWAS Hits Chahal HS et al. 2018 27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=27424798 10 4.3e-94 0.0139988 0.082 0.57 0.562-0.578 OR 1.75 1.4-2.18 1.75 1.4-2.18 1.79 1.53-2.09 1.79 1.53-2.09 1.83 1.65-2.02 1.83 1.65-2.02 1.77 1.64-1.91 1.77 1.64-1.91 1.66 1.57-1.76 1.66 1.57-1.76 1.18 1.08-1.29 0.000286 1.47 1.35-1.6 1.23e-19 1.99 1.84-2.15 1.14e-63 True False False True Both 5450 54568 GRCh37/hg19 P<=5e-08 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000466/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000466/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-08_UKB_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172.22_cSCC-Chahal_P_5e-08_UKB_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-pt-ukb-20200608 prsweb-phecode172-22-gwas-catalog-r2019-05-03-x172-22-pt-ukb-20200608 PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_PT_UKB_20200608 P&T PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_PT_UKB_20200608 172.22 Squamous cell carcinoma;Cutaneous squamous cell carcinoma Binary 19 unique SNPs UKB UK Biobank P&T GWAS Catalog (2019-05-03) 26829030;26908436;27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=26829030+26908436+27424798 14 4.1e-93 0.0148476 0.082 0.575 0.567-0.582 OR 2.19 1.79-2.67 2.19 1.79-2.67 1.89 1.62-2.2 1.89 1.62-2.2 1.82 1.65-2.02 1.82 1.65-2.02 1.71 1.58-1.85 1.71 1.58-1.85 1.62 1.53-1.72 1.62 1.53-1.72 1.34 1.22-1.46 2.92e-10 1.67 1.53-1.82 6.99e-31 2.15 1.97-2.33 7.5e-71 True False False True Both 5450 54568 GRCh37/hg19 P<=1e-07 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000464/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000464/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_PT_UKB_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_PT_UKB_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-22-cscc-chahal-pt-ukb-20200608 prsweb-phecode172-22-cscc-chahal-pt-ukb-20200608 PRSWEB_PHECODE172.22_cSCC-Chahal_PT_UKB_20200608 P&T PRSWEB_PHECODE172.22_cSCC-Chahal_PT_UKB_20200608 172.22 Squamous cell carcinoma Binary known and novel UKB UK Biobank P&T Chahal HS et al. 2018 27424798 https://www.ncbi.nlm.nih.gov/pubmed/?term=27424798 9 3.6e-97 0.0144119 0.0819 0.571 0.563-0.579 OR 1.93 1.56-2.39 1.93 1.56-2.39 1.94 1.66-2.25 1.94 1.66-2.25 1.87 1.69-2.07 1.87 1.69-2.07 1.76 1.63-1.9 1.76 1.63-1.9 1.67 1.58-1.78 1.67 1.58-1.78 1.21 1.1-1.32 3.93e-05 1.51 1.38-1.64 6.31e-21 2.03 1.87-2.21 6.66e-64 True False False True Both 5450 54568 GRCh37/hg19 P<=1.58e-08 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000468/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000468/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172.22_cSCC-Chahal_PT_UKB_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172.22_cSCC-Chahal_PT_UKB_20200608/exclusion.tsv 2020-06-08