prs_id slug legacy_id legacy_model prswebprefix trait_code trait_name trait_type description cohort cohort_label method gwas_source reference_label reference_url snp_count p_value pseudo_r2 brier_score mse aauc aauc_ci effect_metric top_effect_1 top_effect_1_ci top_or_1 top_or_1_ci top_effect_2 top_effect_2_ci top_or_2 top_or_2_ci top_effect_5 top_effect_5_ci top_or_5 top_or_5_ci top_effect_10 top_effect_10_ci top_or_10 top_or_10_ci top_effect_25 top_effect_25_ci top_or_25 top_or_25_ci q1_vs_q2_effect q1_vs_q2_effect_ci q1_vs_q2_p_value q1_vs_q3_effect q1_vs_q3_effect_ci q1_vs_q3_p_value q1_vs_q4_effect q1_vs_q4_effect_ci q1_vs_q4_p_value nominally_significant reversed_effect_warning underpowered_warning upload_to_portal sex cases controls genome_build tuning_parameter weights_external_url weights_url phewas_download_url exclusion_download_url last_updated prsweb-phecode172-20001-1003-p-5e-05-mgi-20200608 prsweb-phecode172-20001-1003-p-5e-05-mgi-20200608 PRSWEB_PHECODE172_20001-1003_P_5e-05_MGI_20200608 P_5e-05 PRSWEB_PHECODE172_20001-1003_P_5e-05_MGI_20200608 172 Cancer code, self-reported: skin cancer Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative Fixed threshold (5e-05) UKB GWAS (PHESANT) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 132 0.00018 0.00190573 0.148 0.515 0.504-0.526 OR 1.31 0.925-1.86 1.31 0.925-1.86 1.27 0.988-1.64 1.27 0.988-1.64 1.23 1.04-1.44 1.23 1.04-1.44 1.17 1.04-1.33 1.17 1.04-1.33 1.14 1.04-1.24 1.14 1.04-1.24 1.12 1.01-1.26 0.037 1.12 1-1.25 0.045 1.23 1.11-1.37 0.000154 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-05 2020-06-08 prsweb-phecode172-c3-skin-p-5e-05-mgi-20200608 prsweb-phecode172-c3-skin-p-5e-05-mgi-20200608 PRSWEB_PHECODE172_C3-SKIN_P_5e-05_MGI_20200608 P_5e-05 PRSWEB_PHECODE172_C3-SKIN_P_5e-05_MGI_20200608 172 Malignant neoplasm of skin Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative Fixed threshold (5e-05) UKB GWAS (FINNGEN) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 433 9.4e-56 0.0244054 0.146 0.586 0.576-0.597 OR 2.48 1.84-3.34 2.48 1.84-3.34 2.04 1.64-2.55 2.04 1.64-2.55 1.76 1.52-2.05 1.76 1.52-2.05 1.84 1.64-2.05 1.84 1.64-2.05 1.72 1.59-1.87 1.72 1.59-1.87 1.27 1.12-1.43 0.000132 1.58 1.41-1.78 1.44e-14 2.2 1.96-2.46 4.39e-43 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-05 2020-06-08 prsweb-phecode172-ukbb-saige-hrc-x172-p-5e-05-mgi-20200608 prsweb-phecode172-ukbb-saige-hrc-x172-p-5e-05-mgi-20200608 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-05_MGI_20200608 P_5e-05 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-05_MGI_20200608 172 Skin cancer Binary ICD9 and ICD10 based PheWAS codes MGI Michigan Genomics Initiative Fixed threshold (5e-05) UKB GWAS (PheCode) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 365 4.7e-61 0.0266946 0.146 0.591 0.581-0.603 OR 1.97 1.46-2.67 1.97 1.46-2.67 2.07 1.66-2.58 2.07 1.66-2.58 2 1.73-2.31 2 1.73-2.31 1.95 1.75-2.18 1.95 1.75-2.18 1.81 1.67-1.97 1.81 1.67-1.97 1.3 1.15-1.47 2.05e-05 1.58 1.4-1.77 5.7e-14 2.34 2.09-2.62 2.2e-49 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-05 2020-06-08 prsweb-phecode172-20001-1003-p-5e-06-mgi-20200608 prsweb-phecode172-20001-1003-p-5e-06-mgi-20200608 PRSWEB_PHECODE172_20001-1003_P_5e-06_MGI_20200608 P_5e-06 PRSWEB_PHECODE172_20001-1003_P_5e-06_MGI_20200608 172 Cancer code, self-reported: skin cancer Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative Fixed threshold (5e-06) UKB GWAS (PHESANT) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 15 1.2e-07 0.00232263 0.148 0.509 0.499-0.52 OR 1.52 1.08-2.14 1.52 1.08-2.14 1.28 0.996-1.65 1.28 0.996-1.65 1.21 1.03-1.43 1.21 1.03-1.43 1.16 1.03-1.31 1.16 1.03-1.31 1.17 1.07-1.27 1.17 1.07-1.27 1.15 1.03-1.29 0.0143 1.24 1.11-1.39 0.000129 1.33 1.19-1.48 4.32e-07 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-06 2020-06-08 prsweb-phecode172-c3-skin-p-5e-06-mgi-20200608 prsweb-phecode172-c3-skin-p-5e-06-mgi-20200608 PRSWEB_PHECODE172_C3-SKIN_P_5e-06_MGI_20200608 P_5e-06 PRSWEB_PHECODE172_C3-SKIN_P_5e-06_MGI_20200608 172 Malignant neoplasm of skin Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative Fixed threshold (5e-06) UKB GWAS (FINNGEN) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 208 3.7e-51 0.0233344 0.146 0.583 0.572-0.593 OR 2.04 1.5-2.79 2.04 1.5-2.79 1.88 1.5-2.36 1.88 1.5-2.36 1.81 1.56-2.1 1.81 1.56-2.1 1.74 1.56-1.95 1.74 1.56-1.95 1.69 1.56-1.84 1.69 1.56-1.84 1.23 1.09-1.38 0.000951 1.57 1.4-1.77 2.5e-14 2.13 1.91-2.39 7.02e-40 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-06 2020-06-08 prsweb-phecode172-ukbb-saige-hrc-x172-p-5e-06-mgi-20200608 prsweb-phecode172-ukbb-saige-hrc-x172-p-5e-06-mgi-20200608 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-06_MGI_20200608 P_5e-06 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-06_MGI_20200608 172 Skin cancer Binary ICD9 and ICD10 based PheWAS codes MGI Michigan Genomics Initiative Fixed threshold (5e-06) UKB GWAS (PheCode) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 159 4.1e-58 0.0262667 0.146 0.586 0.576-0.597 OR 2.06 1.53-2.77 2.06 1.53-2.77 2.36 1.91-2.92 2.36 1.91-2.92 2.12 1.84-2.44 2.12 1.84-2.44 1.9 1.7-2.12 1.9 1.7-2.12 1.76 1.62-1.91 1.76 1.62-1.91 1.24 1.1-1.4 0.000417 1.56 1.39-1.75 1.09e-13 2.24 2-2.5 2.07e-44 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-06 2020-06-08 prsweb-phecode172-20001-1003-p-5e-07-mgi-20200608 prsweb-phecode172-20001-1003-p-5e-07-mgi-20200608 PRSWEB_PHECODE172_20001-1003_P_5e-07_MGI_20200608 P_5e-07 PRSWEB_PHECODE172_20001-1003_P_5e-07_MGI_20200608 172 Cancer code, self-reported: skin cancer Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative Fixed threshold (5e-07) UKB GWAS (PHESANT) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 5 7.4e-10 0.00276979 0.148 0.5 0.489-0.511 OR 1.56 1.12-2.16 1.56 1.12-2.16 1.44 1.13-1.83 1.44 1.13-1.83 1.23 1.05-1.45 1.23 1.05-1.45 1.33 1.18-1.5 1.33 1.18-1.5 1.2 1.1-1.31 1.2 1.1-1.31 1.17 1.05-1.31 0.00608 1.15 1.03-1.29 0.0123 1.33 1.2-1.49 2.26e-07 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-07 2020-06-08 prsweb-phecode172-c3-skin-p-5e-07-mgi-20200608 prsweb-phecode172-c3-skin-p-5e-07-mgi-20200608 PRSWEB_PHECODE172_C3-SKIN_P_5e-07_MGI_20200608 P_5e-07 PRSWEB_PHECODE172_C3-SKIN_P_5e-07_MGI_20200608 172 Malignant neoplasm of skin Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative Fixed threshold (5e-07) UKB GWAS (FINNGEN) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 135 5.3e-51 0.022078 0.146 0.582 0.571-0.593 OR 2.02 1.48-2.76 2.02 1.48-2.76 2.08 1.67-2.59 2.08 1.67-2.59 1.96 1.7-2.27 1.96 1.7-2.27 1.73 1.55-1.94 1.73 1.55-1.94 1.69 1.55-1.83 1.69 1.55-1.83 1.32 1.17-1.49 5.98e-06 1.6 1.42-1.8 4.03e-15 2.2 1.96-2.46 2.12e-42 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-07 2020-06-08 prsweb-phecode172-ukbb-saige-hrc-x172-p-5e-07-mgi-20200608 prsweb-phecode172-ukbb-saige-hrc-x172-p-5e-07-mgi-20200608 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-07_MGI_20200608 P_5e-07 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-07_MGI_20200608 172 Skin cancer Binary ICD9 and ICD10 based PheWAS codes MGI Michigan Genomics Initiative Fixed threshold (5e-07) UKB GWAS (PheCode) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 105 2.3e-58 0.0251403 0.146 0.585 0.575-0.596 OR 2.17 1.62-2.92 2.17 1.62-2.92 2.31 1.87-2.86 2.31 1.87-2.86 2.17 1.88-2.5 2.17 1.88-2.5 1.95 1.75-2.17 1.95 1.75-2.17 1.76 1.62-1.91 1.76 1.62-1.91 1.15 1.02-1.3 0.0227 1.51 1.35-1.7 2.61e-12 2.16 1.93-2.41 6.17e-42 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-07 2020-06-08 prsweb-phecode172-c3-skin-p-5e-09-mgi-20200608 prsweb-phecode172-c3-skin-p-5e-09-mgi-20200608 PRSWEB_PHECODE172_C3-SKIN_P_5e-09_MGI_20200608 P_5e-09 PRSWEB_PHECODE172_C3-SKIN_P_5e-09_MGI_20200608 172 Malignant neoplasm of skin Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative Fixed threshold (5e-09) UKB GWAS (FINNGEN) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 78 1.2e-49 0.0203658 0.146 0.58 0.569-0.591 OR 2.45 1.82-3.29 2.45 1.82-3.29 1.99 1.6-2.49 1.99 1.6-2.49 1.91 1.65-2.21 1.91 1.65-2.21 1.77 1.58-1.97 1.77 1.58-1.97 1.65 1.52-1.8 1.65 1.52-1.8 1.25 1.11-1.41 0.000259 1.57 1.4-1.76 3.5e-14 2.1 1.88-2.35 1.92e-38 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-09 2020-06-08 prsweb-phecode172-ukbb-saige-hrc-x172-p-5e-09-mgi-20200608 prsweb-phecode172-ukbb-saige-hrc-x172-p-5e-09-mgi-20200608 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-09_MGI_20200608 P_5e-09 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-09_MGI_20200608 172 Skin cancer Binary ICD9 and ICD10 based PheWAS codes MGI Michigan Genomics Initiative Fixed threshold (5e-09) UKB GWAS (PheCode) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 60 2.4e-53 0.0215002 0.146 0.58 0.57-0.59 OR 2.68 2.02-3.55 2.68 2.02-3.55 2.27 1.83-2.8 2.27 1.83-2.8 2.07 1.8-2.4 2.07 1.8-2.4 1.86 1.67-2.08 1.86 1.67-2.08 1.63 1.5-1.77 1.63 1.5-1.77 1.15 1.02-1.29 0.0236 1.54 1.37-1.73 1.51e-13 2.01 1.8-2.25 5.58e-35 True False False False Both 3557 14050 GRCh37/hg19 P<=5e-09 2020-06-08 prsweb-phecode172-c3-skin-p-5e-08-mgi-20200608 prsweb-phecode172-c3-skin-p-5e-08-mgi-20200608 PRSWEB_PHECODE172_C3-SKIN_P_5e-08_MGI_20200608 P_5e-08 PRSWEB_PHECODE172_C3-SKIN_P_5e-08_MGI_20200608 172 Malignant neoplasm of skin Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative GWAS Hits UKB GWAS (FINNGEN) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 95 2.9e-50 0.021721 0.146 0.581 0.57-0.592 OR 2.2 1.63-2.98 2.2 1.63-2.98 2.06 1.65-2.57 2.06 1.65-2.57 1.94 1.68-2.25 1.94 1.68-2.25 1.74 1.56-1.94 1.74 1.56-1.94 1.68 1.55-1.83 1.68 1.55-1.83 1.2 1.06-1.35 0.00329 1.61 1.43-1.81 6.97e-16 2.14 1.91-2.39 4.33e-40 True False False True Both 3557 14050 GRCh37/hg19 P<=5e-08 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000400/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000400/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_C3-SKIN_P_5e-08_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_C3-SKIN_P_5e-08_MGI_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-ukbb-saige-hrc-x172-p-5e-08-mgi-20200608 prsweb-phecode172-ukbb-saige-hrc-x172-p-5e-08-mgi-20200608 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-08_MGI_20200608 P_5e-08 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-08_MGI_20200608 172 Skin cancer Binary ICD9 and ICD10 based PheWAS codes MGI Michigan Genomics Initiative GWAS Hits UKB GWAS (PheCode) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 80 1.6e-57 0.0234904 0.146 0.584 0.574-0.594 OR 2.3 1.72-3.09 2.3 1.72-3.09 2.21 1.78-2.74 2.21 1.78-2.74 2.05 1.77-2.37 2.05 1.77-2.37 1.89 1.69-2.11 1.89 1.69-2.11 1.72 1.58-1.87 1.72 1.58-1.87 1.16 1.03-1.31 0.0154 1.54 1.37-1.73 2.41e-13 2.14 1.91-2.39 1.54e-40 True False False True Both 3557 14050 GRCh37/hg19 P<=5e-08 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000404/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000404/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-08_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_P_5e-08_MGI_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-20001-1003-pt-mgi-20200608 prsweb-phecode172-20001-1003-pt-mgi-20200608 PRSWEB_PHECODE172_20001-1003_PT_MGI_20200608 P&T PRSWEB_PHECODE172_20001-1003_PT_MGI_20200608 172 Cancer code, self-reported: skin cancer Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative P&T UKB GWAS (PHESANT) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 6 9.9e-15 0.00493797 0.148 0.513 0.503-0.523 OR 1.56 1.12-2.16 1.56 1.12-2.16 1.29 1.01-1.65 1.29 1.01-1.65 1.42 1.21-1.66 1.42 1.21-1.66 1.36 1.2-1.52 1.36 1.2-1.52 1.3 1.19-1.41 1.3 1.19-1.41 1.17 1.04-1.31 0.00808 1.36 1.21-1.52 9.37e-08 1.53 1.37-1.7 4.4e-14 True False False True Both 3557 14050 GRCh37/hg19 P<=6.31e-07 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000399/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000399/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_20001-1003_PT_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_20001-1003_PT_MGI_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-c3-skin-pt-mgi-20200608 prsweb-phecode172-c3-skin-pt-mgi-20200608 PRSWEB_PHECODE172_C3-SKIN_PT_MGI_20200608 P&T PRSWEB_PHECODE172_C3-SKIN_PT_MGI_20200608 172 Malignant neoplasm of skin Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative P&T UKB GWAS (FINNGEN) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 389 7.4e-56 0.0246682 0.146 0.586 0.576-0.597 OR 2.23 1.64-3.03 2.23 1.64-3.03 2.18 1.75-2.71 2.18 1.75-2.71 1.79 1.54-2.08 1.79 1.54-2.08 1.83 1.64-2.04 1.83 1.64-2.04 1.74 1.6-1.89 1.74 1.6-1.89 1.23 1.09-1.38 0.000978 1.56 1.39-1.76 5.79e-14 2.19 1.96-2.45 8.61e-43 True False False True Both 3557 14050 GRCh37/hg19 P<=3.98e-05 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000402/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000402/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_C3-SKIN_PT_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_C3-SKIN_PT_MGI_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-ukbb-saige-hrc-x172-pt-mgi-20200608 prsweb-phecode172-ukbb-saige-hrc-x172-pt-mgi-20200608 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PT_MGI_20200608 P&T PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PT_MGI_20200608 172 Skin cancer Binary ICD9 and ICD10 based PheWAS codes MGI Michigan Genomics Initiative P&T UKB GWAS (PheCode) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 292 3.8e-62 0.0274273 0.146 0.591 0.581-0.602 OR 2.51 1.89-3.34 2.51 1.89-3.34 2.17 1.74-2.69 2.17 1.74-2.69 2.03 1.76-2.35 2.03 1.76-2.35 1.92 1.72-2.15 1.92 1.72-2.15 1.77 1.63-1.92 1.77 1.63-1.92 1.28 1.13-1.45 6.33e-05 1.62 1.44-1.83 6.87e-16 2.31 2.07-2.59 1.01e-47 True False False True Both 3557 14050 GRCh37/hg19 P<=3.16e-05 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000406/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000406/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PT_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PT_MGI_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-20001-1003-prs-cs-mgi-20200608 prsweb-phecode172-20001-1003-prs-cs-mgi-20200608 PRSWEB_PHECODE172_20001-1003_PRS-CS_MGI_20200608 PRS-CS PRSWEB_PHECODE172_20001-1003_PRS-CS_MGI_20200608 172 Cancer code, self-reported: skin cancer Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative PRS-CS UKB GWAS (PHESANT) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 1103220 0.037 0.000959952 0.148 0.51 0.499-0.521 OR 1.7 1.22-2.38 1.7 1.22-2.38 1.44 1.12-1.84 1.44 1.12-1.84 1.14 0.967-1.35 1.14 0.967-1.35 1.1 0.969-1.24 1.1 0.969-1.24 1.1 1.01-1.2 1.1 1.01-1.2 1.06 0.948-1.18 0.32 1.01 0.906-1.13 0.852 1.12 1.01-1.25 0.0353 True False False True Both 3557 14050 GRCh37/hg19 auto https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000398/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000398/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_20001-1003_PRS-CS_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_20001-1003_PRS-CS_MGI_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-c3-skin-prs-cs-mgi-20200608 prsweb-phecode172-c3-skin-prs-cs-mgi-20200608 PRSWEB_PHECODE172_C3-SKIN_PRS-CS_MGI_20200608 PRS-CS PRSWEB_PHECODE172_C3-SKIN_PRS-CS_MGI_20200608 172 Malignant neoplasm of skin Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative PRS-CS UKB GWAS (FINNGEN) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 1111490 2e-49 0.0231577 0.146 0.581 0.57-0.591 OR 2.25 1.67-3.03 2.25 1.67-3.03 2 1.61-2.5 2 1.61-2.5 1.82 1.57-2.11 1.82 1.57-2.11 1.81 1.62-2.02 1.81 1.62-2.02 1.69 1.55-1.83 1.69 1.55-1.83 1.21 1.07-1.36 0.00172 1.45 1.29-1.64 3.65e-10 2.07 1.85-2.32 3.73e-37 True False False True Both 3557 14050 GRCh37/hg19 auto https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000401/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000401/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_C3-SKIN_PRS-CS_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_C3-SKIN_PRS-CS_MGI_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-ukbb-saige-hrc-x172-prs-cs-mgi-20200608 prsweb-phecode172-ukbb-saige-hrc-x172-prs-cs-mgi-20200608 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PRS-CS_MGI_20200608 PRS-CS PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PRS-CS_MGI_20200608 172 Skin cancer Binary ICD9 and ICD10 based PheWAS codes MGI Michigan Genomics Initiative PRS-CS UKB GWAS (PheCode) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 1119238 1.8e-48 0.021109 0.146 0.58 0.57-0.591 OR 2.42 1.81-3.24 2.42 1.81-3.24 2.04 1.64-2.54 2.04 1.64-2.54 1.86 1.61-2.16 1.86 1.61-2.16 1.73 1.55-1.94 1.73 1.55-1.94 1.67 1.53-1.81 1.67 1.53-1.81 1.33 1.18-1.5 3.5e-06 1.56 1.39-1.76 8.3e-14 2.15 1.92-2.41 2.64e-40 True False False True Both 3557 14050 GRCh37/hg19 auto https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000405/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000405/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PRS-CS_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_PRS-CS_MGI_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-20001-1003-lassosum-mgi-20200608 prsweb-phecode172-20001-1003-lassosum-mgi-20200608 PRSWEB_PHECODE172_20001-1003_LASSOSUM_MGI_20200608 Lassosum PRSWEB_PHECODE172_20001-1003_LASSOSUM_MGI_20200608 172 Cancer code, self-reported: skin cancer Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. Quartile analysis was unavailable in the source output. MGI Michigan Genomics Initiative lassosum UKB GWAS (PHESANT) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 6 2.2e-13 0.00487177 0.148 0.471 0.461-0.48 OR 1.57 1.13-2.17 1.57 1.13-2.17 1.47 1.16-1.87 1.47 1.16-1.87 1.51 1.3-1.77 1.51 1.3-1.77 1.51 1.35-1.69 1.51 1.35-1.69 1.25 1.15-1.36 1.25 1.15-1.36 True False False False Both 3557 14050 GRCh37/hg19 s=0.2;Lambda=0.07848 /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_20001-1003_LASSOSUM_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_20001-1003_LASSOSUM_MGI_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-c3-skin-lassosum-mgi-20200608 prsweb-phecode172-c3-skin-lassosum-mgi-20200608 PRSWEB_PHECODE172_C3-SKIN_LASSOSUM_MGI_20200608 Lassosum PRSWEB_PHECODE172_C3-SKIN_LASSOSUM_MGI_20200608 172 Malignant neoplasm of skin Binary GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018. MGI Michigan Genomics Initiative lassosum UKB GWAS (FINNGEN) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 16316 1.4e-53 0.0218173 0.146 0.584 0.573-0.594 OR 1.65 1.2-2.27 1.65 1.2-2.27 2.01 1.61-2.5 2.01 1.61-2.5 2.11 1.83-2.44 2.11 1.83-2.44 1.87 1.68-2.09 1.87 1.68-2.09 1.74 1.6-1.89 1.74 1.6-1.89 1.27 1.13-1.43 1e-04 1.51 1.35-1.7 3.94e-12 2.18 1.95-2.44 2.44e-42 True False False True Both 3557 14050 GRCh37/hg19 s=0.5;Lambda=0.01129 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000403/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000403/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_C3-SKIN_LASSOSUM_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_C3-SKIN_LASSOSUM_MGI_20200608/exclusion.tsv 2020-06-08 prsweb-phecode172-ukbb-saige-hrc-x172-lassosum-mgi-20200608 prsweb-phecode172-ukbb-saige-hrc-x172-lassosum-mgi-20200608 PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_LASSOSUM_MGI_20200608 Lassosum PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_LASSOSUM_MGI_20200608 172 Skin cancer Binary ICD9 and ICD10 based PheWAS codes MGI Michigan Genomics Initiative lassosum UKB GWAS (PheCode) UKB_GWAS https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761 3166 3.1e-60 0.0256112 0.146 0.586 0.575-0.597 OR 2.26 1.69-3.03 2.26 1.69-3.03 2.41 1.95-2.97 2.41 1.95-2.97 2.11 1.83-2.43 2.11 1.83-2.43 1.98 1.78-2.21 1.98 1.78-2.21 1.77 1.63-1.92 1.77 1.63-1.92 1.16 1.03-1.31 0.0147 1.47 1.3-1.65 1.22e-10 2.15 1.92-2.4 1.17e-41 True False False True Both 3557 14050 GRCh37/hg19 s=0.2;Lambda=0.01438 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000407/ScoringFiles/ https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000407/ScoringFiles/ /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_LASSOSUM_MGI_20200608/all.tsv /larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE172_UKBB-SAIGE-HRC-X172_LASSOSUM_MGI_20200608/exclusion.tsv 2020-06-08