prs_id	slug	legacy_id	legacy_model	prswebprefix	trait_code	trait_name	trait_type	description	cohort	cohort_label	method	gwas_source	reference_label	reference_url	snp_count	p_value	pseudo_r2	brier_score	mse	aauc	aauc_ci	effect_metric	top_effect_1	top_effect_1_ci	top_or_1	top_or_1_ci	top_effect_2	top_effect_2_ci	top_or_2	top_or_2_ci	top_effect_5	top_effect_5_ci	top_or_5	top_or_5_ci	top_effect_10	top_effect_10_ci	top_or_10	top_or_10_ci	top_effect_25	top_effect_25_ci	top_or_25	top_or_25_ci	q1_vs_q2_effect	q1_vs_q2_effect_ci	q1_vs_q2_p_value	q1_vs_q3_effect	q1_vs_q3_effect_ci	q1_vs_q3_p_value	q1_vs_q4_effect	q1_vs_q4_effect_ci	q1_vs_q4_p_value	nominally_significant	reversed_effect_warning	underpowered_warning	upload_to_portal	sex	cases	controls	genome_build	tuning_parameter	weights_external_url	weights_url	phewas_download_url	exclusion_download_url	last_updated
prsweb-phecode187-2-20001-1045-p-5e-05-mgi-20200608	prsweb-phecode187-2-20001-1045-p-5e-05-mgi-20200608	PRSWEB_PHECODE187.2_20001-1045_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE187.2_20001-1045_P_5e-05_MGI_20200608	187.2	Cancer code, self-reported: testicular cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	135	0.0031	0.00244323	0.0846		0.608	0.539-0.676	OR	3.42	0.74-15.8	3.42	0.74-15.8	3.3	1.08-10.1	3.3	1.08-10.1	1.9	0.782-4.61	1.9	0.782-4.61	2.2	1.17-4.14	2.2	1.17-4.14	1.77	1.07-2.92	1.77	1.07-2.92	1.34	0.618-2.92	0.456	1.64	0.779-3.46	0.193	2.34	1.14-4.84	0.0212	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode187-2-c3-testis-p-5e-05-mgi-20200608	prsweb-phecode187-2-c3-testis-p-5e-05-mgi-20200608	PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-05_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	113	0.0024	0.0162497	0.0846		0.606	0.526-0.682	OR	0	0-0	0	0-0	2.88	0.937-8.86	2.88	0.937-8.86	4.27	2.17-8.41	4.27	2.17-8.41	3.16	1.76-5.66	3.16	1.76-5.66	2.1	1.28-3.44	2.1	1.28-3.44	1.32	0.625-2.8	0.466	1.07	0.493-2.34	0.859	2.31	1.16-4.58	0.0167	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode187-2-c62-p-5e-05-mgi-20200608	prsweb-phecode187-2-c62-p-5e-05-mgi-20200608	PRSWEB_PHECODE187.2_C62_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE187.2_C62_P_5e-05_MGI_20200608	187.2	Diagnoses - main ICD10: C62 Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	UKB GWAS (ICD10)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	76	0.38	0.000264435	0.086		0.532	0.459-0.598	OR	0	0-0	0	0-0	0.32	0.0178-5.75	0.32	0.0178-5.75	0.835	0.267-2.62	0.835	0.267-2.62	0.918	0.412-2.05	0.918	0.412-2.05	1.02	0.594-1.77	1.02	0.594-1.77	0.855	0.404-1.81	0.683	1.66	0.859-3.22	0.131	1.23	0.611-2.47	0.565	False	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-p-5e-05-mgi-20200608	prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-p-5e-05-mgi-20200608	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-05_MGI_20200608	187.2	Testicular germ cell tumor;Testicular germ cell cancer	Binary	51 unique SNPs	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	GWAS Catalog (2019-05-03)	19483681;20543847;23666239;23666240;25877299;26503584;28604728;28604732	https://www.ncbi.nlm.nih.gov/pubmed/?term=19483681+20543847+23666239+23666240+25877299+26503584+28604728+28604732	46	0.0033	0.0115383	0.0851		0.599	0.529-0.67	OR	0	0-0	0	0-0	2.41	0.705-8.22	2.41	0.705-8.22	2.99	1.42-6.31	2.99	1.42-6.31	2.56	1.39-4.7	2.56	1.39-4.7	1.81	1.1-2.99	1.81	1.1-2.99	1.1	0.519-2.35	0.797	1.35	0.65-2.81	0.42	1.93	0.973-3.83	0.0599	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode187-2-ukbb-saige-hrc-x187-2-p-5e-05-mgi-20200608	prsweb-phecode187-2-ukbb-saige-hrc-x187-2-p-5e-05-mgi-20200608	PRSWEB_PHECODE187.2_UKBB-SAIGE-HRC-X187.2_P_5e-05_MGI_20200608	P_5e-05	PRSWEB_PHECODE187.2_UKBB-SAIGE-HRC-X187.2_P_5e-05_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	Fixed threshold (5e-05)	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	155	0.27	0.000104252	0.086		0.552	0.48-0.618	OR	0	0-0	0	0-0	1.4	0.33-5.92	1.4	0.33-5.92	1.11	0.395-3.12	1.11	0.395-3.12	1.26	0.61-2.62	1.26	0.61-2.62	1.28	0.756-2.16	1.28	0.756-2.16	0.901	0.42-1.93	0.788	1.73	0.875-3.42	0.115	1.37	0.688-2.75	0.368	False	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-05					2020-06-08
prsweb-phecode187-2-20001-1045-p-5e-06-mgi-20200608	prsweb-phecode187-2-20001-1045-p-5e-06-mgi-20200608	PRSWEB_PHECODE187.2_20001-1045_P_5e-06_MGI_20200608	P_5e-06	PRSWEB_PHECODE187.2_20001-1045_P_5e-06_MGI_20200608	187.2	Cancer code, self-reported: testicular cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-06)	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	27	6e-05	0.0182087	0.0836		0.643	0.574-0.713	OR	3.44	0.735-16.1	3.44	0.735-16.1	2.2	0.632-7.69	2.2	0.632-7.69	2.7	1.24-5.87	2.7	1.24-5.87	3.22	1.8-5.75	3.22	1.8-5.75	2.61	1.6-4.25	2.61	1.6-4.25	2.54	1.07-6.02	0.0337	1.92	0.793-4.63	0.149	4.46	1.99-9.98	0.000272	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode187-2-c3-testis-p-5e-06-mgi-20200608	prsweb-phecode187-2-c3-testis-p-5e-06-mgi-20200608	PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-06_MGI_20200608	P_5e-06	PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-06_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-06)	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	22	0.00012	0.0306466	0.0845		0.636	0.571-0.7	OR	2.24	0.344-14.6	2.24	0.344-14.6	2.09	0.6-7.26	2.09	0.6-7.26	3.1	1.49-6.43	3.1	1.49-6.43	2.62	1.44-4.77	2.62	1.44-4.77	2.63	1.62-4.29	2.63	1.62-4.29	1.58	0.712-3.52	0.26	1.33	0.576-3.07	0.504	3.13	1.53-6.38	0.00172	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode187-2-c62-p-5e-06-mgi-20200608	prsweb-phecode187-2-c62-p-5e-06-mgi-20200608	PRSWEB_PHECODE187.2_C62_P_5e-06_MGI_20200608	P_5e-06	PRSWEB_PHECODE187.2_C62_P_5e-06_MGI_20200608	187.2	Diagnoses - main ICD10: C62 Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-06)	UKB GWAS (ICD10)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	13	0.4	0.000755363	0.086		0.534	0.468-0.604	OR	1.53	0.217-10.8	1.53	0.217-10.8	0.832	0.141-4.9	0.832	0.141-4.9	0.583	0.156-2.18	0.583	0.156-2.18	0.962	0.433-2.14	0.962	0.433-2.14	0.976	0.562-1.7	0.976	0.562-1.7	0.964	0.452-2.06	0.925	1.95	1.01-3.76	0.0464	1.16	0.557-2.41	0.695	False	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-p-5e-06-mgi-20200608	prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-p-5e-06-mgi-20200608	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-06_MGI_20200608	P_5e-06	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-06_MGI_20200608	187.2	Testicular germ cell tumor;Testicular germ cell cancer	Binary	51 unique SNPs	MGI	Michigan Genomics Initiative	Fixed threshold (5e-06)	GWAS Catalog (2019-05-03)	19483681;20543847;23666239;23666240;25877299;26503584;28604728;28604732	https://www.ncbi.nlm.nih.gov/pubmed/?term=19483681+20543847+23666239+23666240+25877299+26503584+28604728+28604732	44	0.0041	0.0104803	0.085		0.594	0.526-0.666	OR	0	0-0	0	0-0	2.83	0.909-8.81	2.83	0.909-8.81	3.39	1.64-7.01	3.39	1.64-7.01	2.92	1.62-5.26	2.92	1.62-5.26	1.92	1.17-3.16	1.92	1.17-3.16	1.17	0.543-2.51	0.692	1.25	0.598-2.62	0.551	2.03	1.02-4.02	0.0423	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode187-2-ukbb-saige-hrc-x187-2-p-5e-06-mgi-20200608	prsweb-phecode187-2-ukbb-saige-hrc-x187-2-p-5e-06-mgi-20200608	PRSWEB_PHECODE187.2_UKBB-SAIGE-HRC-X187.2_P_5e-06_MGI_20200608	P_5e-06	PRSWEB_PHECODE187.2_UKBB-SAIGE-HRC-X187.2_P_5e-06_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	Fixed threshold (5e-06)	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	41	0.52	0.00296752	0.0861		0.525	0.461-0.588	OR	0	0-0	0	0-0	0.905	0.157-5.21	0.905	0.157-5.21	0.639	0.172-2.37	0.639	0.172-2.37	0.587	0.219-1.57	0.587	0.219-1.57	1.13	0.649-1.95	1.13	0.649-1.95	1.27	0.624-2.58	0.511	1.42	0.712-2.85	0.318	1.4	0.681-2.88	0.359	False	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-06					2020-06-08
prsweb-phecode187-2-20001-1045-p-5e-07-mgi-20200608	prsweb-phecode187-2-20001-1045-p-5e-07-mgi-20200608	PRSWEB_PHECODE187.2_20001-1045_P_5e-07_MGI_20200608	P_5e-07	PRSWEB_PHECODE187.2_20001-1045_P_5e-07_MGI_20200608	187.2	Cancer code, self-reported: testicular cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-07)	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	13	2.7e-05	0.0193501	0.0835		0.663	0.594-0.729	OR	1.9	0.288-12.5	1.9	0.288-12.5	1.92	0.541-6.84	1.92	0.541-6.84	2.13	0.939-4.84	2.13	0.939-4.84	3.39	1.92-5.98	3.39	1.92-5.98	2.93	1.8-4.77	2.93	1.8-4.77	1.05	0.447-2.45	0.917	1.48	0.669-3.3	0.332	3.37	1.66-6.84	0.000797	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-07					2020-06-08
prsweb-phecode187-2-c3-testis-p-5e-07-mgi-20200608	prsweb-phecode187-2-c3-testis-p-5e-07-mgi-20200608	PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-07_MGI_20200608	P_5e-07	PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-07_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-07)	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	8	0.0026	0.0229326	0.0849		0.618	0.553-0.684	OR	2.66	0.549-12.9	2.66	0.549-12.9	2.01	0.57-7.11	2.01	0.57-7.11	1.97	0.846-4.57	1.97	0.846-4.57	1.73	0.883-3.37	1.73	0.883-3.37	1.76	1.07-2.91	1.76	1.07-2.91	0.902	0.396-2.05	0.805	1.97	0.957-4.05	0.0656	2.29	1.12-4.65	0.0224	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-07					2020-06-08
prsweb-phecode187-2-c62-p-5e-07-mgi-20200608	prsweb-phecode187-2-c62-p-5e-07-mgi-20200608	PRSWEB_PHECODE187.2_C62_P_5e-07_MGI_20200608	P_5e-07	PRSWEB_PHECODE187.2_C62_P_5e-07_MGI_20200608	187.2	Diagnoses - main ICD10: C62 Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-07)	UKB GWAS (ICD10)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	5	0.36	0.00165989	0.086		0.529	0.461-0.601	OR	0	0-0	0	0-0	0.951	0.166-5.44	0.951	0.166-5.44	1.23	0.469-3.24	1.23	0.469-3.24	0.654	0.262-1.63	0.654	0.262-1.63	1.18	0.697-2.01	1.18	0.697-2.01	1.54	0.765-3.1	0.227	1.29	0.636-2.62	0.478	1.41	0.699-2.84	0.337	False	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-07					2020-06-08
prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-p-5e-07-mgi-20200608	prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-p-5e-07-mgi-20200608	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-07_MGI_20200608	P_5e-07	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-07_MGI_20200608	187.2	Testicular germ cell tumor;Testicular germ cell cancer	Binary	51 unique SNPs	MGI	Michigan Genomics Initiative	Fixed threshold (5e-07)	GWAS Catalog (2019-05-03)	19483681;20543847;23666239;23666240;25877299;26503584;28604728;28604732	https://www.ncbi.nlm.nih.gov/pubmed/?term=19483681+20543847+23666239+23666240+25877299+26503584+28604728+28604732	42	0.0057	0.0095665	0.0851		0.59	0.521-0.665	OR	0	0-0	0	0-0	3.17	1.03-9.73	3.17	1.03-9.73	3.68	1.82-7.48	3.68	1.82-7.48	2.31	1.24-4.28	2.31	1.24-4.28	1.85	1.12-3.06	1.85	1.12-3.06	1.03	0.477-2.23	0.939	1.44	0.697-2.97	0.325	2.05	1.03-4.08	0.0412	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-07					2020-06-08
prsweb-phecode187-2-ukbb-saige-hrc-x187-2-p-5e-07-mgi-20200608	prsweb-phecode187-2-ukbb-saige-hrc-x187-2-p-5e-07-mgi-20200608	PRSWEB_PHECODE187.2_UKBB-SAIGE-HRC-X187.2_P_5e-07_MGI_20200608	P_5e-07	PRSWEB_PHECODE187.2_UKBB-SAIGE-HRC-X187.2_P_5e-07_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	Fixed threshold (5e-07)	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	22	0.66	0.00188642	0.0862		0.505	0.441-0.566	OR	0	0-0	0	0-0	0.885	0.154-5.07	0.885	0.154-5.07	0.878	0.282-2.73	0.878	0.282-2.73	0.982	0.443-2.18	0.982	0.443-2.18	0.794	0.442-1.43	0.794	0.442-1.43	1.72	0.881-3.37	0.112	1.29	0.634-2.62	0.483	1.02	0.474-2.18	0.965	False	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-07					2020-06-08
prsweb-phecode187-2-20001-1045-p-5e-09-mgi-20200608	prsweb-phecode187-2-20001-1045-p-5e-09-mgi-20200608	PRSWEB_PHECODE187.2_20001-1045_P_5e-09_MGI_20200608	P_5e-09	PRSWEB_PHECODE187.2_20001-1045_P_5e-09_MGI_20200608	187.2	Cancer code, self-reported: testicular cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-09)	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	7	0.00012	0.0262156	0.0841		0.65	0.587-0.713	OR	4.93	1.29-18.8	4.93	1.29-18.8	4.2	1.5-11.7	4.2	1.5-11.7	2.57	1.18-5.6	2.57	1.18-5.6	1.74	0.894-3.37	1.74	0.894-3.37	2.52	1.55-4.11	2.52	1.55-4.11	1.81	0.755-4.32	0.184	2.45	1.05-5.7	0.0376	4.48	2-10	0.000266	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-09					2020-06-08
prsweb-phecode187-2-c3-testis-p-5e-09-mgi-20200608	prsweb-phecode187-2-c3-testis-p-5e-09-mgi-20200608	PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-09_MGI_20200608	P_5e-09	PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-09_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	Fixed threshold (5e-09)	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	5	0.00018	0.031599	0.0839		0.651	0.585-0.715	OR	4.29	1.1-16.8	4.29	1.1-16.8	2.91	0.948-8.95	2.91	0.948-8.95	2.45	1.12-5.36	2.45	1.12-5.36	2.83	1.57-5.1	2.83	1.57-5.1	2.5	1.53-4.08	2.5	1.53-4.08	1.24	0.533-2.9	0.616	2.04	0.926-4.51	0.0769	3.28	1.56-6.88	0.00169	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-09					2020-06-08
prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-p-5e-09-mgi-20200608	prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-p-5e-09-mgi-20200608	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-09_MGI_20200608	P_5e-09	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-09_MGI_20200608	187.2	Testicular germ cell tumor;Testicular germ cell cancer	Binary	51 unique SNPs	MGI	Michigan Genomics Initiative	Fixed threshold (5e-09)	GWAS Catalog (2019-05-03)	19483681;20543847;23666239;23666240;25877299;26503584;28604728;28604732	https://www.ncbi.nlm.nih.gov/pubmed/?term=19483681+20543847+23666239+23666240+25877299+26503584+28604728+28604732	31	0.00072	0.0108001	0.0844		0.606	0.533-0.679	OR	4.83	1.23-18.9	4.83	1.23-18.9	4.83	1.8-13	4.83	1.8-13	3.73	1.83-7.61	3.73	1.83-7.61	2.68	1.47-4.86	2.68	1.47-4.86	1.97	1.2-3.24	1.97	1.2-3.24	1.71	0.806-3.61	0.163	1.25	0.571-2.74	0.577	2.56	1.25-5.25	0.0104	True	False	False	False	Male	73	682	GRCh37/hg19	P<=5e-09					2020-06-08
prsweb-phecode187-2-20001-1045-p-5e-08-mgi-20200608	prsweb-phecode187-2-20001-1045-p-5e-08-mgi-20200608	PRSWEB_PHECODE187.2_20001-1045_P_5e-08_MGI_20200608	P_5e-08	PRSWEB_PHECODE187.2_20001-1045_P_5e-08_MGI_20200608	187.2	Cancer code, self-reported: testicular cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	GWAS Hits	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	9	3.1e-05	0.0241313	0.0838		0.658	0.594-0.719	OR	2.64	0.535-13	2.64	0.535-13	3.41	1.17-9.99	3.41	1.17-9.99	2.56	1.17-5.59	2.56	1.17-5.59	2.11	1.12-3.97	2.11	1.12-3.97	2.51	1.55-4.09	2.51	1.55-4.09	1.64	0.697-3.87	0.257	2.06	0.911-4.65	0.0827	3.96	1.84-8.53	0.000445	True	False	False	True	Male	73	682	GRCh37/hg19	P<=5e-08	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000595/ScoringFiles/	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000595/ScoringFiles/	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_20001-1045_P_5e-08_MGI_20200608/all.tsv	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_20001-1045_P_5e-08_MGI_20200608/exclusion.tsv	2020-06-08
prsweb-phecode187-2-c3-testis-p-5e-08-mgi-20200608	prsweb-phecode187-2-c3-testis-p-5e-08-mgi-20200608	PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-08_MGI_20200608	P_5e-08	PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-08_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	GWAS Hits	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	6	2e-04	0.028776	0.0841		0.648	0.581-0.712	OR	3.85	0.942-15.7	3.85	0.942-15.7	2.65	0.828-8.45	2.65	0.828-8.45	2.86	1.34-6.12	2.86	1.34-6.12	2.06	1.09-3.88	2.06	1.09-3.88	2.68	1.65-4.36	2.68	1.65-4.36	0.976	0.42-2.27	0.954	1.59	0.738-3.45	0.235	3.19	1.56-6.51	0.00149	True	False	False	True	Male	73	682	GRCh37/hg19	P<=5e-08	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000598/ScoringFiles/	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000598/ScoringFiles/	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-08_MGI_20200608/all.tsv	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-08_MGI_20200608/exclusion.tsv	2020-06-08
prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-p-5e-08-mgi-20200608	prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-p-5e-08-mgi-20200608	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-08_MGI_20200608	P_5e-08	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-08_MGI_20200608	187.2	Testicular germ cell tumor;Testicular germ cell cancer	Binary	51 unique SNPs	MGI	Michigan Genomics Initiative	GWAS Hits	GWAS Catalog (2019-05-03)	19483681;20543847;23666239;23666240;25877299;26503584;28604728;28604732	https://www.ncbi.nlm.nih.gov/pubmed/?term=19483681+20543847+23666239+23666240+25877299+26503584+28604728+28604732	40	0.003	0.00908486	0.085		0.598	0.526-0.672	OR	0	0-0	0	0-0	1.69	0.416-6.86	1.69	0.416-6.86	4.03	2.01-8.05	4.03	2.01-8.05	2.69	1.48-4.88	2.69	1.48-4.88	1.86	1.13-3.07	1.86	1.13-3.07	0.858	0.391-1.88	0.703	1.15	0.57-2.33	0.691	1.73	0.892-3.35	0.105	True	False	False	True	Male	73	682	GRCh37/hg19	P<=5e-08	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000601/ScoringFiles/	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000601/ScoringFiles/	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-08_MGI_20200608/all.tsv	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_P_5e-08_MGI_20200608/exclusion.tsv	2020-06-08
prsweb-phecode187-2-20001-1045-pt-mgi-20200608	prsweb-phecode187-2-20001-1045-pt-mgi-20200608	PRSWEB_PHECODE187.2_20001-1045_PT_MGI_20200608	P&T	PRSWEB_PHECODE187.2_20001-1045_PT_MGI_20200608	187.2	Cancer code, self-reported: testicular cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	P&T	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	5	0.00019	0.0308642	0.0841		0.649	0.586-0.714	OR	3.49	0.816-14.9	3.49	0.816-14.9	1.89	0.524-6.82	1.89	0.524-6.82	2.1	0.922-4.8	2.1	0.922-4.8	2.97	1.66-5.33	2.97	1.66-5.33	1.7	1.03-2.81	1.7	1.03-2.81	0.864	0.362-2.06	0.743	2.67	1.29-5.56	0.00834	2.49	1.19-5.19	0.0152	True	False	False	True	Male	73	682	GRCh37/hg19	P<=5.01e-11	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000596/ScoringFiles/	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000596/ScoringFiles/	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_20001-1045_PT_MGI_20200608/all.tsv	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_20001-1045_PT_MGI_20200608/exclusion.tsv	2020-06-08
prsweb-phecode187-2-c3-testis-pt-mgi-20200608	prsweb-phecode187-2-c3-testis-pt-mgi-20200608	PRSWEB_PHECODE187.2_C3-TESTIS_PT_MGI_20200608	P&T	PRSWEB_PHECODE187.2_C3-TESTIS_PT_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	P&T	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	31	6.9e-05	0.0375784	0.0844		0.637	0.568-0.703	OR	4.35	1.08-17.5	4.35	1.08-17.5	3.58	1.23-10.4	3.58	1.23-10.4	2.83	1.34-5.98	2.83	1.34-5.98	2.84	1.58-5.11	2.84	1.58-5.11	2.41	1.48-3.93	2.41	1.48-3.93	1.66	0.729-3.79	0.228	1.72	0.764-3.89	0.19	3.4	1.62-7.14	0.00124	True	False	False	True	Male	73	682	GRCh37/hg19	P<=1e-05	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000599/ScoringFiles/	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000599/ScoringFiles/	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_C3-TESTIS_PT_MGI_20200608/all.tsv	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_C3-TESTIS_PT_MGI_20200608/exclusion.tsv	2020-06-08
prsweb-phecode187-2-c62-pt-mgi-20200608	prsweb-phecode187-2-c62-pt-mgi-20200608	PRSWEB_PHECODE187.2_C62_PT_MGI_20200608	P&T	PRSWEB_PHECODE187.2_C62_PT_MGI_20200608	187.2	Diagnoses - main ICD10: C62 Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	P&T	UKB GWAS (ICD10)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	10	0.38	0.00242253	0.086		0.528	0.459-0.597	OR	1.68	0.25-11.2	1.68	0.25-11.2	0.901	0.156-5.19	0.901	0.156-5.19	1.09	0.391-3.07	1.09	0.391-3.07	0.691	0.28-1.71	0.691	0.28-1.71	1.27	0.753-2.15	1.27	0.753-2.15	0.722	0.344-1.51	0.388	1.27	0.662-2.45	0.47	1.15	0.59-2.24	0.682	False	False	False	False	Male	73	682	GRCh37/hg19	P<=3.16e-06					2020-06-08
prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-pt-mgi-20200608	prsweb-phecode187-2-gwas-catalog-r2019-05-03-x187-2-pt-mgi-20200608	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_PT_MGI_20200608	P&T	PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_PT_MGI_20200608	187.2	Testicular germ cell tumor;Testicular germ cell cancer	Binary	51 unique SNPs	MGI	Michigan Genomics Initiative	P&T	GWAS Catalog (2019-05-03)	19483681;20543847;23666239;23666240;25877299;26503584;28604728;28604732	https://www.ncbi.nlm.nih.gov/pubmed/?term=19483681+20543847+23666239+23666240+25877299+26503584+28604728+28604732	22	0.00012	0.0136253	0.084		0.625	0.557-0.693	OR	6.05	1.73-21.2	6.05	1.73-21.2	5.18	1.98-13.5	5.18	1.98-13.5	4.14	2.07-8.28	4.14	2.07-8.28	2.96	1.64-5.32	2.96	1.64-5.32	2.17	1.32-3.55	2.17	1.32-3.55	1.98	0.893-4.38	0.0929	1.69	0.75-3.82	0.205	3.19	1.49-6.86	0.0029	True	False	False	True	Male	73	682	GRCh37/hg19	P<=2.51e-11	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000603/ScoringFiles/	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000603/ScoringFiles/	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_PT_MGI_20200608/all.tsv	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_GWAS-Catalog-r2019-05-03-X187.2_PT_MGI_20200608/exclusion.tsv	2020-06-08
prsweb-phecode187-2-ukbb-saige-hrc-x187-2-pt-mgi-20200608	prsweb-phecode187-2-ukbb-saige-hrc-x187-2-pt-mgi-20200608	PRSWEB_PHECODE187.2_UKBB-SAIGE-HRC-X187.2_PT_MGI_20200608	P&T	PRSWEB_PHECODE187.2_UKBB-SAIGE-HRC-X187.2_PT_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	ICD9 and ICD10 based PheWAS codes	MGI	Michigan Genomics Initiative	P&T	UKB GWAS (PheCode)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	48	0.8	0.00426687	0.0862		0.512	0.447-0.574	OR	0	0-0	0	0-0	1.39	0.335-5.77	1.39	0.335-5.77	0.868	0.279-2.71	0.868	0.279-2.71	0.444	0.148-1.33	0.444	0.148-1.33	1.46	0.86-2.47	1.46	0.86-2.47	0.973	0.486-1.95	0.939	0.837	0.409-1.71	0.627	1.23	0.633-2.38	0.544	False	False	False	False	Male	73	682	GRCh37/hg19	P<=6.31e-06					2020-06-08
prsweb-phecode187-2-20001-1045-prs-cs-mgi-20200608	prsweb-phecode187-2-20001-1045-prs-cs-mgi-20200608	PRSWEB_PHECODE187.2_20001-1045_PRS-CS_MGI_20200608	PRS-CS	PRSWEB_PHECODE187.2_20001-1045_PRS-CS_MGI_20200608	187.2	Cancer code, self-reported: testicular cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	PRS-CS	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	1084569	0.29	0.00765996	0.0859		0.539	0.462-0.614	OR	0	0-0	0	0-0	1.68	0.41-6.91	1.68	0.41-6.91	2.16	0.932-5.01	2.16	0.932-5.01	1.49	0.736-3	1.49	0.736-3	1.53	0.922-2.55	1.53	0.922-2.55	0.991	0.494-1.99	0.981	1.03	0.51-2.07	0.938	1.44	0.739-2.8	0.285	False	False	False	False	Male	73	682	GRCh37/hg19	auto					2020-06-08
prsweb-phecode187-2-c3-testis-prs-cs-mgi-20200608	prsweb-phecode187-2-c3-testis-prs-cs-mgi-20200608	PRSWEB_PHECODE187.2_C3-TESTIS_PRS-CS_MGI_20200608	PRS-CS	PRSWEB_PHECODE187.2_C3-TESTIS_PRS-CS_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	PRS-CS	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	1061611	0.4	0.00899134	0.0861		0.531	0.468-0.594	OR	0	0-0	0	0-0	0.998	0.175-5.67	0.998	0.175-5.67	1.19	0.43-3.3	1.19	0.43-3.3	1.01	0.454-2.24	1.01	0.454-2.24	1.13	0.656-1.93	1.13	0.656-1.93	1.03	0.511-2.06	0.943	1.17	0.592-2.3	0.656	1.13	0.565-2.28	0.724	False	False	False	False	Male	73	682	GRCh37/hg19	auto					2020-06-08
prsweb-phecode187-2-20001-1045-lassosum-mgi-20200608	prsweb-phecode187-2-20001-1045-lassosum-mgi-20200608	PRSWEB_PHECODE187.2_20001-1045_LASSOSUM_MGI_20200608	Lassosum	PRSWEB_PHECODE187.2_20001-1045_LASSOSUM_MGI_20200608	187.2	Cancer code, self-reported: testicular cancer	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	lassosum	UKB GWAS (PHESANT)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	771	6.7e-05	0.0505392	0.084		0.656	0.593-0.717	OR	2.72	0.568-13.1	2.72	0.568-13.1	1.33	0.317-5.59	1.33	0.317-5.59	2.11	0.93-4.78	2.11	0.93-4.78	2.46	1.34-4.51	2.46	1.34-4.51	2.07	1.27-3.4	2.07	1.27-3.4	2.55	1.05-6.21	0.0389	3.02	1.25-7.28	0.0138	4.64	1.98-10.9	0.00042	True	False	False	True	Male	73	682	GRCh37/hg19	s=0.9;Lambda=0.07848	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000597/ScoringFiles/	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000597/ScoringFiles/	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_20001-1045_LASSOSUM_MGI_20200608/all.tsv	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_20001-1045_LASSOSUM_MGI_20200608/exclusion.tsv	2020-06-08
prsweb-phecode187-2-c3-testis-lassosum-mgi-20200608	prsweb-phecode187-2-c3-testis-lassosum-mgi-20200608	PRSWEB_PHECODE187.2_C3-TESTIS_LASSOSUM_MGI_20200608	Lassosum	PRSWEB_PHECODE187.2_C3-TESTIS_LASSOSUM_MGI_20200608	187.2	Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	lassosum	UKB GWAS (FINNGEN)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	250	0.00011	0.0530666	0.0839		0.636	0.565-0.698	OR	6.35	1.81-22.3	6.35	1.81-22.3	3.18	1.07-9.47	3.18	1.07-9.47	3.53	1.73-7.2	3.53	1.73-7.2	3.03	1.7-5.41	3.03	1.7-5.41	1.91	1.16-3.14	1.91	1.16-3.14	3.02	1.3-7.04	0.0105	2.42	1.03-5.73	0.0437	3.92	1.72-8.9	0.00113	True	False	False	True	Male	73	682	GRCh37/hg19	s=0.9;Lambda=0.1	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000600/ScoringFiles/	https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000600/ScoringFiles/	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_C3-TESTIS_LASSOSUM_MGI_20200608/all.tsv	/larsf/prsweb-data/cancerprsweb/releases/cancerprsweb_20200608/phewas/PRSWEB_PHECODE187.2_C3-TESTIS_LASSOSUM_MGI_20200608/exclusion.tsv	2020-06-08
prsweb-phecode187-2-c62-lassosum-mgi-20200608	prsweb-phecode187-2-c62-lassosum-mgi-20200608	PRSWEB_PHECODE187.2_C62_LASSOSUM_MGI_20200608	Lassosum	PRSWEB_PHECODE187.2_C62_LASSOSUM_MGI_20200608	187.2	Diagnoses - main ICD10: C62 Malignant neoplasm of testis	Binary	GWAS round 2: Results shared 1st August 2018. Imputed genotypes from HRC plus UK10K & 1000 Genomes reference panels as released by UK Biobank in March 2018.	MGI	Michigan Genomics Initiative	lassosum	UKB GWAS (ICD10)	UKB_GWAS	https://www.ncbi.nlm.nih.gov/pubmed/?term=30104761	2944812	0.42	0.00411796	0.0861		0.527	0.461-0.599	OR	0	0-0	0	0-0	0.32	0.0177-5.77	0.32	0.0177-5.77	2.08	0.901-4.79	2.08	0.901-4.79	1.78	0.918-3.44	1.78	0.918-3.44	1.13	0.657-1.93	1.13	0.657-1.93	1.43	0.735-2.79	0.291	1.07	0.521-2.19	0.856	1.34	0.672-2.66	0.408	False	False	False	False	Male	73	682	GRCh37/hg19	s=0.2;Lambda=0.001					2020-06-08