prs_id slug legacy_id legacy_model prswebprefix trait_code trait_name trait_type description cohort cohort_label method gwas_source reference_label reference_url snp_count p_value pseudo_r2 brier_score mse aauc aauc_ci effect_metric top_effect_1 top_effect_1_ci top_or_1 top_or_1_ci top_effect_2 top_effect_2_ci top_or_2 top_or_2_ci top_effect_5 top_effect_5_ci top_or_5 top_or_5_ci top_effect_10 top_effect_10_ci top_or_10 top_or_10_ci top_effect_25 top_effect_25_ci top_or_25 top_or_25_ci q1_vs_q2_effect q1_vs_q2_effect_ci q1_vs_q2_p_value q1_vs_q3_effect q1_vs_q3_effect_ci q1_vs_q3_p_value q1_vs_q4_effect q1_vs_q4_effect_ci q1_vs_q4_p_value nominally_significant reversed_effect_warning underpowered_warning upload_to_portal sex cases controls genome_build tuning_parameter weights_external_url weights_url phewas_download_url exclusion_download_url last_updated mgi-skin-cancer-fixed-threshold-5e-04 mgi-skin-cancer-fixed-threshold-5e-04 172-UKB-5E-4-MGI UKB-5E-4 172-UKB-5E-4-MGI 172 Skin Cancer Binary Recovered from the first PRSweb skin cancer portal snapshot dated 2019-06-14. Historical top-percentile summaries were not preserved in the legacy bundle, but quartile enrichment and full PheWAS tables are preserved. This model was reconstructed from UK Biobank-derived summary-statistic depth comparisons in the 2019 manuscript supplement. MGI Michigan Genomics Initiative Fixed threshold (5e-04) UK Biobank summary statistics Fritsche et al. 2019 PRSweb manuscript https://pubmed.ncbi.nlm.nih.gov/31194742/ 1473 1.9e-30 0.14 0.56 0.54-0.57 OR 1.14 1.04-1.26 1.28 1.16-1.41 1.62 1.47-1.78 True False False True Both 4503 22747 GRCh37/hg19 P<=5e-04 /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/weights/172_UKB-5E-4_weights37.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-4-MGI/all.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-4-MGI/exclusion.tsv 2019-06-14 mgi-skin-cancer-fixed-threshold-5e-05 mgi-skin-cancer-fixed-threshold-5e-05 172-UKB-5E-5-MGI UKB-5E-5 172-UKB-5E-5-MGI 172 Skin Cancer Binary Recovered from the first PRSweb skin cancer portal snapshot dated 2019-06-14. Historical top-percentile summaries were not preserved in the legacy bundle, but quartile enrichment and full PheWAS tables are preserved. This model was reconstructed from UK Biobank-derived summary-statistic depth comparisons in the 2019 manuscript supplement. MGI Michigan Genomics Initiative Fixed threshold (5e-05) UK Biobank summary statistics Fritsche et al. 2019 PRSweb manuscript https://pubmed.ncbi.nlm.nih.gov/31194742/ 309 6.8e-63 0.14 0.58 0.57-0.59 OR 1.26 1.14-1.4 1.56 1.41-1.72 2.06 1.87-2.27 True False False True Both 4503 22747 GRCh37/hg19 P<=5e-05 /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/weights/172_UKB-5E-5_weights37.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-5-MGI/all.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-5-MGI/exclusion.tsv 2019-06-14 mgi-skin-cancer-fixed-threshold-5e-06 mgi-skin-cancer-fixed-threshold-5e-06 172-UKB-5E-6-MGI UKB-5E-6 172-UKB-5E-6-MGI 172 Skin Cancer Binary Recovered from the first PRSweb skin cancer portal snapshot dated 2019-06-14. Historical top-percentile summaries were not preserved in the legacy bundle, but quartile enrichment and full PheWAS tables are preserved. This model was reconstructed from UK Biobank-derived summary-statistic depth comparisons in the 2019 manuscript supplement. MGI Michigan Genomics Initiative Fixed threshold (5e-06) UK Biobank summary statistics Fritsche et al. 2019 PRSweb manuscript https://pubmed.ncbi.nlm.nih.gov/31194742/ 104 1e-66 0.14 0.58 0.57-0.59 OR 1.19 1.07-1.32 1.51 1.36-1.66 2.04 1.85-2.24 True False False True Both 4503 22747 GRCh37/hg19 P<=5e-06 /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/weights/172_UKB-5E-6_weights37.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-6-MGI/all.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-6-MGI/exclusion.tsv 2019-06-14 mgi-skin-cancer-fixed-threshold-5e-07 mgi-skin-cancer-fixed-threshold-5e-07 172-UKB-5E-7-MGI UKB-5E-7 172-UKB-5E-7-MGI 172 Skin Cancer Binary Recovered from the first PRSweb skin cancer portal snapshot dated 2019-06-14. Historical top-percentile summaries were not preserved in the legacy bundle, but quartile enrichment and full PheWAS tables are preserved. This model was reconstructed from UK Biobank-derived summary-statistic depth comparisons in the 2019 manuscript supplement. MGI Michigan Genomics Initiative Fixed threshold (5e-07) UK Biobank summary statistics Fritsche et al. 2019 PRSweb manuscript https://pubmed.ncbi.nlm.nih.gov/31194742/ 63 3.1e-70 0.14 0.58 0.57-0.59 OR 1.26 1.14-1.4 1.53 1.38-1.69 2.13 1.93-2.34 True False False True Both 4503 22747 GRCh37/hg19 P<=5e-07 /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/weights/172_UKB-5E-7_weights37.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-7-MGI/all.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-7-MGI/exclusion.tsv 2019-06-14 mgi-skin-cancer-fixed-threshold-5e-08 mgi-skin-cancer-fixed-threshold-5e-08 172-UKB-5E-8-MGI UKB-5E-8 172-UKB-5E-8-MGI 172 Skin Cancer Binary Recovered from the first PRSweb skin cancer portal snapshot dated 2019-06-14. Historical top-percentile summaries were not preserved in the legacy bundle, but quartile enrichment and full PheWAS tables are preserved. This model was reconstructed from UK Biobank-derived summary-statistic depth comparisons in the 2019 manuscript supplement. MGI Michigan Genomics Initiative Fixed threshold (5e-08) UK Biobank summary statistics Fritsche et al. 2019 PRSweb manuscript https://pubmed.ncbi.nlm.nih.gov/31194742/ 50 5.7e-70 0.14 0.58 0.57-0.59 OR 1.24 1.12-1.38 1.54 1.39-1.7 2.17 1.97-2.39 True False False True Both 4503 22747 GRCh37/hg19 P<=5e-08 /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/weights/172_UKB-5E-8_weights37.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-8-MGI/all.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-8-MGI/exclusion.tsv 2019-06-14 mgi-skin-cancer-fixed-threshold-5e-09 mgi-skin-cancer-fixed-threshold-5e-09 172-UKB-5E-9-MGI UKB-5E-9 172-UKB-5E-9-MGI 172 Skin Cancer Binary Recovered from the first PRSweb skin cancer portal snapshot dated 2019-06-14. Historical top-percentile summaries were not preserved in the legacy bundle, but quartile enrichment and full PheWAS tables are preserved. This model was reconstructed from UK Biobank-derived summary-statistic depth comparisons in the 2019 manuscript supplement. MGI Michigan Genomics Initiative Fixed threshold (5e-09) UK Biobank summary statistics Fritsche et al. 2019 PRSweb manuscript https://pubmed.ncbi.nlm.nih.gov/31194742/ 40 6.1e-65 0.14 0.58 0.57-0.59 OR 1.2 1.08-1.33 1.54 1.39-1.7 2.04 1.85-2.25 True False False True Both 4503 22747 GRCh37/hg19 P<=5e-09 /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/weights/172_UKB-5E-9_weights37.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-9-MGI/all.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-5E-9-MGI/exclusion.tsv 2019-06-14 mgi-skin-cancer-ldpred-1 mgi-skin-cancer-ldpred-1 172-UKB-LDpred-1-MGI UKB-LDpred-1 172-UKB-LDpred-1-MGI 172 Skin Cancer Binary Recovered from the first PRSweb skin cancer portal snapshot dated 2019-06-14. Historical top-percentile summaries were not preserved in the legacy bundle, but quartile enrichment and full PheWAS tables are preserved. This model was reconstructed from UK Biobank-derived summary-statistic depth comparisons in the 2019 manuscript supplement. MGI Michigan Genomics Initiative LDpred (1%) UK Biobank summary statistics Fritsche et al. 2019 PRSweb manuscript https://pubmed.ncbi.nlm.nih.gov/31194742/ 3e-55 0.017 0.14 0.57 0.56-0.58 OR 1.33 1.2-1.48 1.54 1.39-1.7 2.0 1.82-2.21 True False False False Both 4503 22747 GRCh37/hg19 LDpred causal fraction 1% /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-LDpred-1-MGI/all.tsv /larsf/prsweb-data/skincancerprsweb/releases/skincancerprsweb_20190614/phewas/172-UKB-LDpred-1-MGI/exclusion.tsv 2019-06-14