GOLD - process-eh documentation

Note

Setup-eh is no longer actively supported. To estimate haplotype frequencies using EM, use ldmax.

Input

A series of EH input files, generated by setup-eh.

Output

Pair-wise haplotype frequencies are calculated using EH. A table summarising linkage disequilibrium statistics in the region is output to the screen. This table is compatible with the graphical interface. A typical series of commands would be:

>setup-eh -pped.dat -mmap.dat
>process-eh > disequilibrium.xt

The file disequilibrium.xt could then be analysed viewed through the graphical interface.

Notes

The EH program should be in your executable search path.