University of Michigan Center for Statistical 


GOLD - collect-simwalk2


Simwalk2 haplotyping run input files (TABLE*.ALL and HAPLO*.*). An optional parameter (-a) specifies that all haplotype estimates should be considered. The default is to ignore haplotype vectors that simwalk2 has marked as candidates for re-analysis. (This reanalysis can be carried out by copying the RERUN-NN.BCH file into BATCH2.DAT and rerunning simwalk2).


A single file, named HAPLO.LST listing all estimated haplotypes. This file can be used as input to haploxt.


University of Michigan | School of Public Health | Abecasis Lab