MACH Download

If you use MACH please e-mail goncalo@umich.edu or Yun Li or fill out the registration form. To get MACH, download one of the archives below and unpack it. Each archive includes a brief README, examples, and binary executables. Source will be available soon (once we finish cleaning it up and decide on a license!)

Pre-release Version

A pre-release version of MACH 1.0, our software for haplotype estimating and inference of missing genotypes is now available. If you require support for a different platform, please e-mail Goncalo Abecasis or Yun Li.

    Linux-mach.tar.gz         For GNU/LINUX systems
    Darwin-mach.tar.gz        For Windows systems
    MacOS-mach.tar.gz         For MacOS systems
    mach.source.tar.gz        Source Codes
    mach2qtl.tar.gz           For Quantitative Trait Analysis
    mach2dat.tar.gz           For Binary Trait Analysis

If you use MACH, mach2qtl or mach2dat, please cite:

Li Y, Willer CJ, Ding J, Scheet P and Abecasis GR (2010) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol 34:816-834.
Li Y, Willer CJ, Sanna S and Abecasis GR (2009) Genotype Imputation. Annu Rev Genomics Hum Genet 10:387-406.

Other Resources

1000 Genomes Data

    1000G Phase3 v5
    1000G PhaseI v3 Shapeit2
    1000G PhaseI v3
    1000G PhaseI v2
    1000G Phase I (α)
    1000G 2010-08 releases
    1000G 2010-06 releases
    1000G 2010-03 releases
    UoM 2009-08 releases
    Sanger 2009-08 releases

HapMap Data

    HapMap II phased data: r21 (release 21)
    HapMap III phased data: r2

ChromosomeX

    chrX phaed data

University of Michigan | School of Public Health | Abecasis Lab