|
Command Line |
Quick reference sheet with a summary of all QTDT command line options. Detailed
descriptions of most of these options are available below. |
|
Input Files |
QTDT requires matched data and pedigree
files as input. An optional IBD information
file is recommended for variance component analyses. |
|
Association Model |
As well as the model of Abecasis (2000), the models of Allison
(1997, TDTQ5), Rabinowitz (1997), Monks (1998) and Fulker (2000)
are also supported. |
|
Variance Components |
Optionally, variance components can be used to describe the similarities
between individuals in a pedigree. |
|
Permutations |
Asymptotic p-values can be misleading for non-normal data. This
option employs a general permutation framework that allows for
non-normal data or small samples. |
|
Multiple Alleles |
Options for analysing microsatellites or haplotypes. |
|
Twins |
Details of support for twin data within QTDT. |
|
Additional Information |
Options for the analysis of SNP data and modelling imprinting. Brief
description of output files. |
