SamFilter Class Reference

List of all members.

Public Types

enum  FilterStatus { NONE, CLIPPED, FILTERED }

Static Public Member Functions

static FilterStatus clipOnMismatchThreshold (SamRecord &record, GenomeSequence &refSequence, double mismatchThreshold)
static FilterStatus filterOnMismatchQuality (SamRecord &record, GenomeSequence &refSequence, uint32_t qualityThreshold, uint8_t defaultQualityInt)
static uint32_t sumMismatchQuality (SamRecord &record, GenomeSequence &refSequence, uint8_t defaultQualityInt)
static void filterRead (SamRecord &record)

Detailed Description

Definition at line 24 of file SamFilter.h.

The documentation for this class was generated from the following files:
Generated on Thu Dec 9 12:22:23 2010 for StatGen Software by  doxygen 1.6.3