SamValidator Class Reference

List of all members.

Static Public Member Functions
static bool	isValid (SamFileHeader &samHeader, SamRecord &samRecord, SamValidationErrors &validationErrors)
static bool	isValidQname (const char *qname, uint8_t qnameLen, SamValidationErrors &validationErrors)
static bool	isValidFlag (uint16_t flag, SamValidationErrors &validationErrors)
static bool	isValidRname (SamFileHeader &samHeader, const char *rname, SamValidationErrors &validationErrors)
static bool	isValidRname (const char *rname, SamValidationErrors &validationErrors)
static bool	isValidRefID (int32_t refID, const SamReferenceInfo &refInfo, SamValidationErrors &validationErrors)
static bool	isValid1BasedPos (int32_t pos, SamValidationErrors &validationErrors)
static bool	isValidMapQuality (uint8_t mapQuality, SamValidationErrors &validationErrors)
static bool	isValidCigar (const char *cigar, const char *sequence, SamValidationErrors &validationErrors)
static bool	isValidMrnm ()
static bool	isValidMpos ()
static bool	isValidIsize ()
static bool	isValidSeq ()
static bool	isValidQuality (const char *quality, const char *sequence, SamValidationErrors &validationErrors)
static bool	isValidTag ()
static bool	isValidVtype ()
static bool	isValidValue ()

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Detailed Description

Definition at line 134 of file SamValidation.h.

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The documentation for this class was generated from the following files:

• lib/bam/SamValidation.h
• lib/bam/SamValidation.cpp