BaseAsciiMap Class Reference

List of all members.

Public Types
enum	SPACE_TYPE { UNKNOWN, BASE_SPACE, COLOR_SPACE }
Public Member Functions
void	setBaseMapType (SPACE_TYPE spaceType)
int	getBaseIndex (const char &letter)
SPACE_TYPE	getSpaceType ()
void	setNumPrimerBases (int numPrimerBases)
void	resetPrimerCount ()
void	resetBaseMapType ()
Static Public Attributes
static const int	baseAIndex = 000
static const int	baseTIndex = 001
static const int	baseCIndex = 002
static const int	baseGIndex = 003
static const int	baseNIndex = 004
static const int	baseXIndex = 005
static const char	int2base [] = "ACGTNMXXXXXXXXXX"
static const char	int2colorSpace [] = "0123NXXXXXXXXXXX"
static unsigned char	base2complement []
static unsigned char	baseColor2int [256+1]
static unsigned char	base2int [256+1]
static unsigned char	color2int [256+1]

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Detailed Description

Definition at line 23 of file BaseAsciiMap.h.

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Member Data Documentation

unsigned char BaseAsciiMap::base2complement [static]

Initial value:

    "NNNNNNNNNNNNNNNN"  
    "NNNNNNNNNNNNNNNN"  
    "NNNNNNNNNNNNNNNN"  
    "0123NNNNNNNNNNNN"  
    "NTNGNNNCNNNNNNNN"  
    "NNNNANNNNNNNNNNN"  
    "NTNGNNNCNNNNNNNN"  
    "NNNNANNNNNNNNNNN"  

    "NNNNNNNNNNNNNNNN"  
    "NNNNNNNNNNNNNNNN"  
    "NNNNNNNNNNNNNNNN"  
    "NNNNNNNNNNNNNNNN"  
    "NNNNNNNNNNNNNNNN"  
    "NNNNNNNNNNNNNNNN"  
    "NNNNNNNNNNNNNNNN"  
    "NNNNNNNNNNNNNNNN"

Definition at line 39 of file BaseAsciiMap.h.

unsigned char BaseAsciiMap::base2int [static]

Initial value:

    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\000\005\001\005\005\005\002\005\005\005\005\005\005\004\005"  
    "\005\005\005\005\003\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\000\005\001\005\005\005\002\005\005\005\005\005\005\004\005"  
    "\005\005\005\005\003\005\005\005\005\005\005\005\005\005\005\005"  

    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"

Definition at line 44 of file BaseAsciiMap.h.

unsigned char BaseAsciiMap::baseColor2int [static]

Initial value:

    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\004\005"  
    "\000\001\002\003\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\000\005\001\005\005\005\002\005\005\005\005\005\005\004\005"  
    "\005\005\005\005\003\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\000\005\001\005\005\005\002\005\005\005\005\005\005\004\005"  
    "\005\005\005\005\003\005\005\005\005\005\005\005\005\005\005\005"  

    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"

Definition at line 43 of file BaseAsciiMap.h.

unsigned char BaseAsciiMap::color2int [static]

Initial value:

    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\004\005"  
    "\000\001\002\003\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  

    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"  
    "\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005\005"

Definition at line 45 of file BaseAsciiMap.h.

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The documentation for this class was generated from the following files:

• general/BaseAsciiMap.h
• general/BaseAsciiMap.cpp