, including all inherited members.
| AddPerson(const char *famid, const char *pid, const char *fatid, const char *motid, int sex, bool delay_sort=false) (defined in Pedigree) | Pedigree | |
| affectionCount (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| affectionLookup (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| affectionNames (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| AlleleFrequenciesAvailable() (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| AutosomalCheck() (defined in Pedigree) | Pedigree | |
| chromosomeX (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| count (defined in Pedigree) | Pedigree | |
| CountAlleles(int marker) (defined in Pedigree) | Pedigree | |
| covariateCount (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| covariateLookup (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| covariateNames (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| Dichotomize(int trait, double mean=_NAN_) (defined in Pedigree) | Pedigree | |
| DichotomizeAll(double mean=_NAN_) (defined in Pedigree) | Pedigree | |
| EstimateFrequencies(int estimator, bool quiet=false) (defined in Pedigree) | Pedigree | |
| ExtractFamily(int id, Pedigree &new_ped) (defined in Pedigree) | Pedigree | |
| ExtractOnAffection(int a, Pedigree &new_ped, int target_status=2) (defined in Pedigree) | Pedigree | |
| families (defined in Pedigree) | Pedigree | |
| familyCount (defined in Pedigree) | Pedigree | |
| Filter(IntArray &filter) (defined in Pedigree) | Pedigree | |
| FindFamily(const char *famid) (defined in Pedigree) | Pedigree | |
| FindPerson(const char *famid, const char *pid) (defined in Pedigree) | Pedigree | |
| FlagMissingMarkers(IntArray &missingMarkers) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| GetAffectionID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| GetCovariateID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| GetMarkerID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| GetMarkerInfo(String &name) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| GetMarkerInfo(int marker) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| GetOrderedMarkers(IntArray &markers) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| GetStringID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| GetTraitID(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| GrowMarkerInfo() (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| haveTwins (defined in Pedigree) | Pedigree | |
| InheritanceCheck(bool abortIfInconsistent=true) (defined in Pedigree) | Pedigree | |
| Load(IFILE &input) (defined in Pedigree) | Pedigree | |
| Load(const char *input, bool allowFailures=false) (defined in Pedigree) | Pedigree | |
| LoadAllele(int marker, String &label) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| LoadAllele(MarkerInfo *info, String &label) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| LoadAlleleFrequencies(const char *filename, bool required=false) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| LoadAlleleFrequencies(IFILE &file) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| LoadBasepairMap(const char *filename) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| LoadBasepairMap(IFILE &file) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| LoadMarkerMap(const char *filename, bool filter=false) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| LoadMarkerMap(IFILE &file, bool filter=false) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| LoadMendel(IFILE &input) (defined in Pedigree) | Pedigree | |
| LookupAffection(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | [inline, static] |
| LookupCovariate(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | [inline, static] |
| LookupMarker(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | [inline, static] |
| LookupString(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | [inline, static] |
| LookupTrait(const char *name) (defined in PedigreeGlobals) | PedigreeGlobals | [inline, static] |
| LumpAlleles(double treshold, bool reorder=true) (defined in Pedigree) | Pedigree | |
| markerCount (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| markerInfo (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| markerInfoByInteger (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| markerInfoByName (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| markerInfoCount (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| markerInfoSize (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| markerLookup (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| markerNames (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| MarkerPositionsAvailable() (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| MergeTwins() (defined in Pedigree) | Pedigree | |
| missing (defined in Pedigree) | Pedigree | [static] |
| multiFileCount (defined in Pedigree) | Pedigree | |
| multiPd (defined in Pedigree) | Pedigree | |
| operator[](int i) (defined in Pedigree) | Pedigree | [inline] |
| pd (defined in Pedigree) | Pedigree | |
| Pedigree() (defined in Pedigree) | Pedigree | |
| PedigreeGlobals() (defined in PedigreeGlobals) | PedigreeGlobals | [inline] |
| persons (defined in Pedigree) | Pedigree | |
| Prepare(IFILE &input) (defined in Pedigree) | Pedigree | |
| Prepare(const char *input) (defined in Pedigree) | Pedigree | |
| PrepareDichotomization() (defined in Pedigree) | Pedigree | |
| sexAsCovariate (defined in Pedigree) | Pedigree | [static] |
| SexLinkedCheck() (defined in Pedigree) | Pedigree | |
| sexSpecificMap (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| ShowMemoryInfo() (defined in Pedigree) | Pedigree | |
| size (defined in Pedigree) | Pedigree | |
| Sort() (defined in Pedigree) | Pedigree | |
| SortMarkersInMapOrder(IntArray &markers, int chromosome=-1) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| stringCount (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| stringLookup (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| stringNames (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| traitCount (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| traitLookup (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| traitNames (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| TranslateSexCode(const char *code, bool &failure) (defined in Pedigree) | Pedigree | |
| Trim(bool quiet=false, int *informative=NULL) (defined in Pedigree) | Pedigree | |
| TwinCheck() (defined in Pedigree) | Pedigree | |
| VerifySexSpecificOrder() (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| WriteDataFile(FILE *output) (defined in Pedigree) | Pedigree | |
| WriteDataFile(const char *output) (defined in Pedigree) | Pedigree | |
| WriteFreqFile(const char *filename, bool old_format=false) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| WriteFreqFile(FILE *file, bool old_format=false) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| WriteMapFile(const char *filename) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| WriteMapFile(FILE *file) (defined in PedigreeGlobals) | PedigreeGlobals | [static] |
| WritePedigreeFile(FILE *output) (defined in Pedigree) | Pedigree | |
| WritePedigreeFile(const char *output) (defined in Pedigree) | Pedigree | |
| WritePerson(FILE *output, int who, const char *famid=NULL, const char *pid=NULL, const char *fatid=NULL, const char *motid=NULL) (defined in Pedigree) | Pedigree | |
| WriteRecodedPerson(FILE *output, int who, MarkerInfo **markerInfo, const char *famid=NULL, const char *pid=NULL, const char *fatid=NULL, const char *motid=NULL) (defined in Pedigree) | Pedigree | |
| ~Pedigree() (defined in Pedigree) | Pedigree | |
| ~PedigreeGlobals() (defined in PedigreeGlobals) | PedigreeGlobals | |
