Pedigree Class Reference
Inheritance diagram for Pedigree:
Collaboration diagram for Pedigree:
Public Member Functions | |
| void | Prepare (IFILE &input) |
| void | Load (IFILE &input) |
| void | LoadMendel (IFILE &input) |
| void | Prepare (const char *input) |
| void | Load (const char *input, bool allowFailures=false) |
| int | TranslateSexCode (const char *code, bool &failure) |
| void | PrepareDichotomization () |
| int | Dichotomize (int trait, double mean=_NAN_) |
| void | DichotomizeAll (double mean=_NAN_) |
| void | WriteDataFile (FILE *output) |
| void | WritePedigreeFile (FILE *output) |
| void | WriteDataFile (const char *output) |
| void | WritePedigreeFile (const char *output) |
| void | WritePerson (FILE *output, int who, const char *famid=NULL, const char *pid=NULL, const char *fatid=NULL, const char *motid=NULL) |
| void | WriteRecodedPerson (FILE *output, int who, MarkerInfo **markerInfo, const char *famid=NULL, const char *pid=NULL, const char *fatid=NULL, const char *motid=NULL) |
| void | Sort () |
| Family * | FindFamily (const char *famid) |
| Person * | FindPerson (const char *famid, const char *pid) |
| int | CountAlleles (int marker) |
| void | LumpAlleles (double treshold, bool reorder=true) |
| void | EstimateFrequencies (int estimator, bool quiet=false) |
| Person & | operator[] (int i) |
| bool | InheritanceCheck (bool abortIfInconsistent=true) |
| bool | AutosomalCheck () |
| bool | SexLinkedCheck () |
| bool | TwinCheck () |
| void | MergeTwins () |
| void | Trim (bool quiet=false, int *informative=NULL) |
| void | AddPerson (const char *famid, const char *pid, const char *fatid, const char *motid, int sex, bool delay_sort=false) |
| void | ExtractFamily (int id, Pedigree &new_ped) |
| void | ExtractOnAffection (int a, Pedigree &new_ped, int target_status=2) |
| void | Filter (IntArray &filter) |
| void | ShowMemoryInfo () |
Public Attributes | |
| int | size |
| int | count |
| Person ** | persons |
| int | familyCount |
| Family ** | families |
| int | haveTwins |
| PedigreeDescription | pd |
| PedigreeDescription * | multiPd |
| int | multiFileCount |
Static Public Attributes | |
| static bool | sexAsCovariate = false |
| static String | missing |
Detailed Description
Definition at line 32 of file Pedigree.h.
The documentation for this class was generated from the following files:
- general/Pedigree.h
- general/Pedigree.cpp
- general/PedigreeLoader.cpp
- general/PedigreeTrim.cpp
- general/PedigreeTwin.cpp
