SamFlag Class Reference

Static Public Member Functions
static bool	isMapped (uint16_t flag)
static bool	isPaired (uint16_t flag)
static bool	isReverse (uint16_t flag)
static bool	isProperPair (uint16_t flag)
static bool	isDuplicate (uint16_t flag)
static bool	isQCFailure (uint16_t flag)
static bool	isFirstFragment (uint16_t flag)
static bool	isLastFragment (uint16_t flag)
static bool	isMidFragment (uint16_t flag)
static bool	isUnknownFragment (uint16_t flag)
static uint8_t	getFragmentType (uint16_t flag)
static void	setUnmapped (uint16_t &flag)
Static Public Attributes
static const int16_t	PAIRED = 0x0001
	Constants for parsing a flag.
static const int16_t	PROPER_PAIR = 0x0002
static const int16_t	UNMAPPED = 0x0004
static const int16_t	MATE_UNMAPPED = 0x0008
static const int16_t	REVERSE = 0x0010
static const int16_t	MATE_REVERSED = 0x0020
static const int16_t	FIRST_READ = 0x0040
static const int16_t	SECOND_READ = 0x0080
static const int16_t	SECONDARY_ALIGNMENT = 0x0100
static const int16_t	FAILED_QUALITY = 0x0200
static const int16_t	DUPLICATE = 0x0400
static const int16_t	FRAGMENT_INFO = 0x00C0
static const int16_t	FRAGMENT_SHIFT = 6

Detailed Description

Definition at line 24 of file SamFlag.h.

The documentation for this class was generated from the following file: