PosList Class Reference

Store refID/position, but does not store values < 0. More...

#include <PosList.h>

Inheritance diagram for PosList:

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Collaboration diagram for PosList:

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List of all members.

Public Member Functions
	PosList (int numRefs, int numPositions)
	Reserves space for numRefs reference ids and numPositions for each id.
void	addPosition (int refID, int refPosition)
	Add the specified reference id/position (negative values will not be added).
bool	hasPosition (int refID, int refPosition)
	Returns whether or not this list contains the specified reference ID and position (negative values will automatically return false).
Protected Member Functions
	PosList (const PosList &p)
void	initVars ()
Protected Attributes
std::vector< std::vector< bool > >	myPosList
int	myNumRefs
int	myNumPos

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Detailed Description

Store refID/position, but does not store values < 0.

Definition at line 24 of file PosList.h.

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Member Function Documentation

bool PosList::hasPosition	(	int	refID,
		int	refPosition
	)

Returns whether or not this list contains the specified reference ID and position (negative values will automatically return false).

Definition at line 81 of file PosList.cpp.

Referenced by Pileup< PILEUP_TYPE, FUNC_CLASS >::processAlignmentRegion().

{
    // Check for negative numbers, if so, just return false, not found.
    if((refID < 0) || (refPosition < 0))
    {
        return(false);
    }
    bool found = false;
    try
    {
        if((myPosList.at(refID)).at(refPosition))
        {
            found = true;
        }
    }
    catch (std::out_of_range& oor)
    {
            // Nothing to do here, if it was out of range, then
            // the position was not found (already set to false).
    }
    return(found);
}

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The documentation for this class was generated from the following files:

• bam/PosList.h
• bam/PosList.cpp