SamHelper Class Reference

Class for extracting information from a SAM Flag. More...

#include <SamHelper.h>

List of all members.

Static Public Member Functions
static uint64_t	combineChromPos (int32_t chromID, int32_t position)
	Helper method that combines the chromosome ID and position into a 64bit number by shifting the chromosome ID to the upper bits.

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Detailed Description

Class for extracting information from a SAM Flag.

Definition at line 28 of file SamHelper.h.

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Member Function Documentation

static uint64_t SamHelper::combineChromPos	(	int32_t	chromID,
		int32_t	position
	)		[inline, static]

Helper method that combines the chromosome ID and position into a 64bit number by shifting the chromosome ID to the upper bits.

Definition at line 34 of file SamHelper.h.

Referenced by SamCoordOutput::add(), and SamCoordOutput::flush().

    {
        return(((uint64_t)chromID << 32) | (position & 0xFFFFFFFF));
    }

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The documentation for this class was generated from the following file:

• bam/SamHelper.h