glfHandler Class Reference

Collaboration diagram for glfHandler:

List of all members.

Public Member Functions
bool	Open (const String &filename)
void	OpenStub ()
bool	Create (const String &filename)
bool	isOpen ()
void	Close ()
void	Rewind ()
bool	NextSection ()
bool	NextEntry ()
bool	NextBaseEntry ()
void	BeginSection (const String &sectionLabel, int sectionLength)
void	EndSection ()
void	WriteEntry (int outputPosition)
char	GetReference (int position, char defaultBase)
int	GetDepth (int position)
const double *	GetLikelihoods (int position)
const unsigned char *	GetLogLikelihoods (int position)
int	GetMapQuality (int position)
Static Public Member Functions
static const double *	GetDefaultLikelihoods ()
static const unsigned char *	GetDefaultLogLikelihoods ()
static int	GenotypeIndex (int base1, int base2)
Public Attributes
bool	isStub
IFILE	handle
String	header
String	label
int	sections
int	currentSection
int	maxPosition
bool	endOfSection
glfEntry	data
int	position
double	likelihoods [10]
String	indelSequence [2]
const char *	errorMsg

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Detailed Description

Definition at line 72 of file glfHandler.h.

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The documentation for this class was generated from the following files:

• general/glfHandler.h
• general/glfHandler.cpp