SamFlag Class Reference

List of all members.

Static Public Member Functions
static bool	isMapped (uint16_t flag)
static bool	isPaired (uint16_t flag)
static bool	isReverse (uint16_t flag)
static bool	isProperPair (uint16_t flag)
static bool	isDuplicate (uint16_t flag)
static bool	isQCFailure (uint16_t flag)
static void	setUnmapped (uint16_t &flag)
Static Public Attributes
static const int16_t	PAIRED = 0x0001
	Constants for parsing a flag.
static const int16_t	PROPER_PAIR = 0x0002
static const int16_t	UNMAPPED = 0x0004
static const int16_t	MATE_UNMAPPED = 0x0008
static const int16_t	REVERSE = 0x0010
static const int16_t	MATE_REVERSED = 0x0020
static const int16_t	FIRST_READ = 0x0040
static const int16_t	SECOND_READ = 0x0080
static const int16_t	SECONDARY_ALIGNMENT = 0x0100
static const int16_t	FAILED_QUALITY = 0x0200
static const int16_t	DUPLICATE = 0x0400

---

Detailed Description

Definition at line 24 of file SamFlag.h.

---

The documentation for this class was generated from the following file:

• lib/bam/SamFlag.h