glfHandler Class Reference
Collaboration diagram for glfHandler:
Public Member Functions | |
| bool | Open (const String &filename) |
| bool | Create (const String &filename) |
| bool | isOpen () |
| void | Close () |
| void | Rewind () |
| bool | NextSection () |
| bool | NextEntry () |
| bool | NextBaseEntry () |
| void | BeginSection (const String §ionLabel, int sectionLength) |
| void | EndSection () |
| void | WriteEntry (int outputPosition) |
| char | GetReference (int position, char defaultBase) |
| int | GetDepth (int position) |
| const double * | GetLikelihoods (int position) |
| const unsigned char * | GetLogLikelihoods (int position) |
| int | GetMapQuality (int position) |
Static Public Member Functions | |
| static const double * | GetDefaultLikelihoods () |
| static const unsigned char * | GetDefaultLogLikelihoods () |
| static int | GenotypeIndex (int base1, int base2) |
Public Attributes | |
| IFILE | handle |
| String | header |
| String | label |
| int | sections |
| int | currentSection |
| int | maxPosition |
| glfEntry | data |
| int | position |
| double | likelihoods [10] |
| String | indelSequence [2] |
| const char * | errorMsg |
Detailed Description
Definition at line 64 of file glfHandler.h.
The documentation for this class was generated from the following files:
- lib/general/glfHandler.h
- lib/general/glfHandler.cpp
