glfEntry Struct Reference

Collaboration diagram for glfEntry:

Public Member Functions
glfEntry &	operator= (glfEntry &rhs)
Public Attributes
unsigned char	refBase:4
	"XACMGRSVTWYHKDBN"[ref_base] gives the reference base
unsigned char	recordType:4
unsigned int	offset
	offset of this record from the previous one, in bases
unsigned	depth:24
	log10 minimum likelihood * 10 and the number of mapped reads
unsigned	minLLK:8
unsigned char	mapQuality
	root mean squared maximum mapping quality for overlapping reads
union {
unsigned char lk [10]
	log10 likelihood ratio * 10 for genotypes AA, AC, AG, AT, CC, CG, CT, GG, GT, TT
glfIndel indel
};

Detailed Description

Definition at line 38 of file glfHandler.h.

The documentation for this struct was generated from the following files: