University of Michigan Center for Statistical 


1000G Phase3 v5 Reference

The release contains haplotypes on 2,504 samples (#haplotypes = 5,008) for total ~81.2M polymorphic markers

Latest version of MaCH/MaCH-Admix and minimac2 can handle vcf format.

Original data available from the 1000 Genomes Project FTP site. If you have any questions email Christian Fuchsberger, or Yun Li.

ALL reference panel - no monomorphic and no singleton sites (recommended; updated 26Oct14)

ALL.phase3_v5.shapeit2_mvncall_integrated.noSingleton.tgz (9.7Gb)


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