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1000G Phase3 v5 Reference
The release contains haplotypes on 2,504 samples (#haplotypes = 5,008) for total ~81.2M polymorphic markers
Latest version of MaCH/MaCH-Admix and
minimac2 can handle vcf format.
Original data available
from the
1000 Genomes Project FTP site.
If you have any questions email Christian Fuchsberger, or Yun Li.
ALL reference panel - no monomorphic and no singleton sites (recommended; updated 26Oct14)ALL.phase3_v5.shapeit2_mvncall_integrated.noSingleton.tgz (9.7Gb)
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