BaseUtilitiesTest.cpp

/*
 *  Copyright (C) 2012  Regents of the University of Michigan
 *
 *   This program is free software: you can redistribute it and/or modify
 *   it under the terms of the GNU General Public License as published by
 *   the Free Software Foundation, either version 3 of the License, or
 *   (at your option) any later version.
 *
 *   This program is distributed in the hope that it will be useful,
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *   GNU General Public License for more details.
 *
 *   You should have received a copy of the GNU General Public License
 *   along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
#include "BaseUtilitiesTest.h"
#include <assert.h>
#include <iostream>

int main(int argc, char ** argv)
{
    testReverseComplement();
}

void testReverseComplement()
{
    // Test odd number of bases.
    std::string testString = "ACGTAACCTTGGG";
    std::string expectedReverse = "CCCAAGGTTACGT";

    BaseUtilities::reverseComplement(testString);
    assert(testString == expectedReverse);

    // Test even number of bases.
    testString = "ACGTAACCTGGG";
    expectedReverse = "CCCAGGTTACGT";

    BaseUtilities::reverseComplement(testString);
    assert(testString == expectedReverse);
}