| bam/BamIndex.cpp [code] | |
| bam/BamIndex.h [code] | |
| bam/BamInterface.cpp [code] | |
| bam/BamInterface.h [code] | |
| bam/CigarHelper.cpp [code] | |
| bam/CigarHelper.h [code] | |
| bam/GenericSamInterface.cpp [code] | |
| bam/GenericSamInterface.h [code] | |
| bam/Pileup.h [code] | |
| bam/PileupElement.cpp [code] | |
| bam/PileupElement.h [code] | |
| bam/PileupElementBaseQual.cpp [code] | |
| bam/PileupElementBaseQual.h [code] | |
| bam/PosList.cpp [code] | |
| bam/PosList.h [code] | |
| bam/SamCoordOutput.cpp [code] | |
| bam/SamCoordOutput.h [code] | |
| bam/SamFile.cpp [code] | |
| bam/SamFile.h [code] | |
| bam/SamFileHeader.cpp [code] | |
| bam/SamFileHeader.h [code] | |
| bam/SamFilter.cpp [code] | |
| bam/SamFilter.h [code] | |
| bam/SamFlag.h [code] | |
| bam/SamHeaderHD.cpp [code] | |
| bam/SamHeaderHD.h [code] | |
| bam/SamHeaderPG.cpp [code] | |
| bam/SamHeaderPG.h [code] | |
| bam/SamHeaderRecord.cpp [code] | |
| bam/SamHeaderRecord.h [code] | |
| bam/SamHeaderRG.cpp [code] | |
| bam/SamHeaderRG.h [code] | |
| bam/SamHeaderSQ.cpp [code] | |
| bam/SamHeaderSQ.h [code] | |
| bam/SamHeaderTag.cpp [code] | |
| bam/SamHeaderTag.h [code] | |
| bam/SamHelper.h [code] | |
| bam/SamInterface.cpp [code] | |
| bam/SamInterface.h [code] | |
| bam/SamQuerySeqWithRefHelper.cpp [code] | |
| bam/SamQuerySeqWithRefHelper.h [code] | |
| bam/SamRecord.cpp [code] | |
| bam/SamRecord.h [code] | |
| bam/SamRecordHelper.cpp [code] | |
| bam/SamRecordHelper.h [code] | |
| bam/SamRecordPool.cpp [code] | |
| bam/SamRecordPool.h [code] | |
| bam/SamReferenceInfo.cpp [code] | |
| bam/SamReferenceInfo.h [code] | |
| bam/SamStatistics.cpp [code] | |
| bam/SamStatistics.h [code] | |
| bam/SamStatus.h [code] | |
| bam/SamTags.cpp [code] | |
| bam/SamTags.h [code] | |
| bam/SamValidation.cpp [code] | |
| bam/SamValidation.h [code] | |
| bam/examples/pileup/Main.cpp [code] | |
| bam/examples/printRefPositions/Main.cpp [code] | |
| bam/examples/printRefPositions/PrintRefPositions.cpp [code] | |
| bam/examples/printRefPositions/PrintRefPositions.h [code] | |
| bam/test/BamIndexTest.cpp [code] | |
| bam/test/BamIndexTest.h [code] | |
| bam/test/Main.cpp [code] | |
| bam/test/Modify.cpp [code] | |
| bam/test/Modify.h [code] | |
| bam/test/ModifyVar.cpp [code] | |
| bam/test/ModifyVar.h [code] | |
| bam/test/ReadFiles.cpp [code] | |
| bam/test/ReadFiles.h [code] | |
| bam/test/SamFileTest.cpp [code] | |
| bam/test/SamFileTest.h [code] | |
| bam/test/ShiftIndels.cpp [code] | |
| bam/test/ShiftIndels.h [code] | |
| bam/test/TestCigarHelper.cpp [code] | |
| bam/test/TestCigarHelper.h [code] | |
| bam/test/TestEquals.cpp [code] | |
| bam/test/TestEquals.h [code] | |
| bam/test/TestFilter.cpp [code] | |
| bam/test/TestFilter.h [code] | |
| bam/test/TestPileup.cpp [code] | |
| bam/test/TestPileup.h [code] | |
| bam/test/TestPosList.cpp [code] | |
| bam/test/TestPosList.h [code] | |
| bam/test/TestSamCoordOutput.cpp [code] | |
| bam/test/TestSamCoordOutput.h [code] | |
| bam/test/TestSamRecordHelper.cpp [code] | |
| bam/test/TestSamRecordHelper.h [code] | |
| bam/test/TestSamRecordPool.cpp [code] | |
| bam/test/TestSamRecordPool.h [code] | |
| bam/test/TestValidate.cpp [code] | |
| bam/test/TestValidate.h [code] | |
| bam/test/ValidationTest.cpp [code] | |
| bam/test/ValidationTest.h [code] | |
| bam/test/WriteFiles.cpp [code] | |
| bam/test/WriteFiles.h [code] | |
| fastq/BaseComposition.cpp [code] | |
| fastq/BaseComposition.h [code] | |
| fastq/BaseCount.cpp [code] | |
| fastq/BaseCount.h [code] | |
| fastq/FastQFile.cpp [code] | |
| fastq/FastQFile.h [code] | |
| fastq/FastQStatus.cpp [code] | |
| fastq/FastQStatus.h [code] | |
| fastq/test/FastQFileTest.cpp [code] | |
| general/BaseAsciiMap.cpp [code] | |
| general/BaseAsciiMap.h [code] | |
| general/BaseQualityHelper.cpp [code] | |
| general/BaseQualityHelper.h [code] | |
| general/BaseUtilities.cpp [code] | |
| general/BaseUtilities.h [code] | |
| general/BasicHash.cpp [code] | |
| general/BasicHash.h [code] | |
| general/BgzfFileType.cpp [code] | |
| general/BgzfFileType.h [code] | |
| general/BgzfFileTypeRecovery.cpp [code] | |
| general/BgzfFileTypeRecovery.h [code] | |
| general/CharBuffer.cpp [code] | |
| general/CharBuffer.h [code] | |
| general/Chromosome.cpp [code] | |
| general/Chromosome.h [code] | |
| general/Cigar.cpp [code] | |
| general/Cigar.h [code] | |
| general/CigarRoller.cpp [code] | |
| general/CigarRoller.h [code] | |
| general/Constant.h [code] | |
| general/CSG_MD5.h [code] | |
| general/Error.cpp [code] | |
| general/Error.h [code] | |
| general/ErrorHandler.cpp [code] | |
| general/ErrorHandler.h [code] | |
| general/FileType.cpp [code] | |
| general/FileType.h [code] | |
| general/FortranFormat.cpp [code] | |
| general/FortranFormat.h [code] | |
| general/Generic.cpp [code] | |
| general/Generic.h [code] | |
| general/GenomeSequence.cpp [code] | |
| general/GenomeSequence.h [code] | |
| general/GenomeSequenceHelpers.h [code] | |
| general/GenotypeLists.cpp [code] | |
| general/GenotypeLists.h [code] | |
| general/glfHandler.cpp [code] | |
| general/glfHandler.h [code] | |
| general/GreedyTupleAligner.h [code] | |
| general/GzipFileType.cpp [code] | |
| general/GzipFileType.h [code] | |
| general/GzipHeader.cpp [code] | |
| general/GzipHeader.h [code] | |
| general/Hash.cpp [code] | |
| general/Hash.h [code] | |
| general/IndexBase.cpp [code] | |
| general/IndexBase.h [code] | |
| general/InplaceMerge.cpp [code] | |
| general/InplaceMerge.h [code] | |
| general/Input.cpp [code] | |
| general/Input.h [code] | |
| general/InputFile.cpp [code] | |
| general/InputFile.h [code] | |
| general/IntArray.cpp [code] | |
| general/IntArray.h [code] | |
| general/IntHash.cpp [code] | |
| general/IntHash.h [code] | |
| general/LongHash.h [code] | |
| general/LongInt.h [code] | |
| general/LongLongCounter.cpp [code] | |
| general/LongLongCounter.h [code] | |
| general/MapFunction.cpp [code] | |
| general/MapFunction.h [code] | |
| general/MathConstant.h [code] | |
| general/MathMatrix.cpp [code] | |
| general/MathMatrix.h [code] | |
| general/MathVector.cpp [code] | |
| general/MathVector.h [code] | |
| general/MemoryAllocators.cpp [code] | |
| general/MemoryAllocators.h [code] | |
| general/MemoryInfo.cpp [code] | |
| general/MemoryInfo.h [code] | |
| general/MemoryMap.cpp [code] | |
| general/MemoryMap.h [code] | |
| general/MemoryMapArray.cpp [code] | |
| general/MemoryMapArray.h [code] | |
| general/MiniDeflate.cpp [code] | |
| general/MiniDeflate.h [code] | |
| general/NonOverlapRegions.cpp [code] | |
| general/NonOverlapRegions.h [code] | |
| general/PackedVector.h [code] | |
| general/Parameters.cpp [code] | |
| general/Parameters.h [code] | |
| general/Pedigree.cpp [code] | |
| general/Pedigree.h [code] | |
| general/PedigreeAlleleFreq.cpp [code] | |
| general/PedigreeAlleleFreq.h [code] | |
| general/PedigreeAlleles.h [code] | |
| general/PedigreeDescription.cpp [code] | |
| general/PedigreeDescription.h [code] | |
| general/PedigreeFamily.cpp [code] | |
| general/PedigreeFamily.h [code] | |
| general/PedigreeGlobals.cpp [code] | |
| general/PedigreeGlobals.h [code] | |
| general/PedigreeLoader.cpp [code] | |
| general/PedigreePerson.cpp [code] | |
| general/PedigreePerson.h [code] | |
| general/PedigreeTrim.cpp [code] | |
| general/PedigreeTwin.cpp [code] | |
| general/Performance.h [code] | |
| general/PhoneHome.cpp [code] | |
| general/PhoneHome.h [code] | |
| general/QuickIndex.cpp [code] | |
| general/QuickIndex.h [code] | |
| general/Random.cpp [code] | |
| general/Random.h [code] | |
| general/ReferenceSequence.cpp [code] | |
| general/ReferenceSequence.h [code] | |
| general/ReusableVector.h [code] | |
| general/SimpleStats.h [code] | |
| general/SmithWaterman.cpp [code] | |
| general/SmithWaterman.h [code] | |
| general/Sort.cpp [code] | |
| general/Sort.h [code] | |
| general/StatGenStatus.cpp [code] | |
| general/StatGenStatus.h [code] | |
| general/STLUtilities.cpp [code] | |
| general/STLUtilities.h [code] | |
| general/String.cpp [code] | |
| general/StringAlias.cpp [code] | |
| general/StringAlias.h [code] | |
| general/StringArray.cpp [code] | |
| general/StringArray.h [code] | |
| general/StringBasics.cpp [code] | |
| general/StringBasics.h [code] | |
| general/StringHash.cpp [code] | |
| general/StringHash.h [code] | |
| general/StringMap.cpp [code] | |
| general/StringMap.h [code] | |
| general/Tabix.cpp [code] | |
| general/Tabix.h [code] | |
| general/TrimSequence.h [code] | |
| general/UncompressedFileType.cpp [code] | |
| general/UncompressedFileType.h [code] | |
| general/UnitTest.h [code] | |
| general/test/Chromosome_test.cpp [code] | |
| general/test/GenomeSequence_test.cpp [code] | |
| general/test/GreedyTupleAligner_test.cpp [code] | |
| general/test/gtest.cpp [code] | |
| general/test/STLUtilities_test.cpp [code] | |
| general/test/TrimSequence_test.cpp [code] | |
| general/test/baseUtilitiesTest/BaseUtilitiesTest.cpp [code] | |
| general/test/baseUtilitiesTest/BaseUtilitiesTest.h [code] | |
| general/test/cigar/CigarRollerTest.cpp [code] | |
| general/test/cigar/CigarRollerTest.h [code] | |
| general/test/dbsnp/Main.cpp [code] | |
| general/test/inputFileTest/InputFileTest.cpp [code] | |
| general/test/inputFileTest/InputFileTest.h [code] | |
| general/test/memoryMapArrayTest/MemoryMapArrayTest.cpp [code] | |
| general/test/memoryMapArrayTest/MemoryMapArrayTest.h [code] | |
| general/test/nonOverlapRegions/NonOverlapRegionsTest.cpp [code] | |
| general/test/nonOverlapRegions/NonOverlapRegionsTest.h [code] | |
| general/test/packedVectorTest/PackedVectorTest.cpp [code] | |
| general/test/packedVectorTest/PackedVectorTest.h [code] | |
| general/test/referenceSequenceTest/ReferenceSequenceTest.cpp [code] | |
| general/test/referenceSequenceTest/ReferenceSequenceTest.h [code] | |
| general/test/reusableVector/ReusableVectorTest.cpp [code] | |
| general/test/reusableVector/ReusableVectorTest.h [code] | |
| general/test/string/StringTest.cpp [code] | |
| general/test/string/StringTest.h [code] | |
| general/test/trimSequence/TrimSequence.cpp [code] | |
| glf/GlfException.cpp [code] | |
| glf/GlfException.h [code] | |
| glf/GlfFile.cpp [code] | |
| glf/GlfFile.h [code] | |
| glf/GlfHeader.cpp [code] | |
| glf/GlfHeader.h [code] | |
| glf/GlfRecord.cpp [code] | |
| glf/GlfRecord.h [code] | |
| glf/GlfRefSection.cpp [code] | |
| glf/GlfRefSection.h [code] | |
| glf/GlfStatus.cpp [code] | |
| glf/GlfStatus.h [code] | |
| glf/test/Main.cpp [code] | |
| glf/test/ReadFiles.cpp [code] | |
| glf/test/ReadFiles.h [code] | |
| glf/test/Validate.cpp [code] | |
| glf/test/Validate.h [code] | |
| glf/test/WriteFiles.cpp [code] | |
| glf/test/WriteFiles.h [code] | |
| samtools/bam.h [code] | |
| samtools/bgzf.c [code] | |
| samtools/bgzf.h [code] | |
| samtools/khash.h [code] | |
| samtools/knetfile.c [code] | |
| samtools/knetfile.h [code] | |
1.7.6.1 
