libStatGen Software
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00001 /* 00002 * Copyright (C) 2010 Regents of the University of Michigan 00003 * 00004 * This program is free software: you can redistribute it and/or modify 00005 * it under the terms of the GNU General Public License as published by 00006 * the Free Software Foundation, either version 3 of the License, or 00007 * (at your option) any later version. 00008 * 00009 * This program is distributed in the hope that it will be useful, 00010 * but WITHOUT ANY WARRANTY; without even the implied warranty of 00011 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 00012 * GNU General Public License for more details. 00013 * 00014 * You should have received a copy of the GNU General Public License 00015 * along with this program. If not, see <http://www.gnu.org/licenses/>. 00016 */ 00017 00018 #ifndef __GLF_FILE_H__ 00019 #define __GLF_FILE_H__ 00020 00021 #include "InputFile.h" 00022 #include "GlfHeader.h" 00023 #include "GlfRefSection.h" 00024 #include "GlfRecord.h" 00025 #include "GlfStatus.h" 00026 00027 /// This class allows a user to easily read/write a GLF file. 00028 class GlfFile 00029 { 00030 public: 00031 /// Enum for indicating whether to open the file for read or write. 00032 enum OpenType 00033 { 00034 READ, ///< open for reading. 00035 WRITE ///< open for writing. 00036 }; 00037 00038 /// Default Constructor. 00039 GlfFile(); 00040 00041 /// Constructor that opens the specified file based on the specified mode 00042 /// (READ/WRITE). Default is READ. 00043 /// \param filename name of the file to open. 00044 /// \param mode mode to use for opening the file (defaults to READ). 00045 GlfFile(const char* filename, OpenType mode = READ); 00046 00047 /// Closes the file if there is one open, adding an end marker record 00048 /// if there is a previous section and one has not already been written. 00049 virtual ~GlfFile(); 00050 00051 /// Open a glf file for reading with the specified filename. 00052 /// \param filename glf file to open for reading. 00053 /// \return true = success; false = failure. 00054 bool openForRead(const char * filename); 00055 00056 /// Open a glf file for reading with the specified filename and read the 00057 /// header into the specified header. 00058 /// \param filename glf file to open for reading. 00059 /// \param header header object to populate with the file's glf header. 00060 /// \return true = success; false = failure. 00061 bool openForRead(const char * filename, GlfHeader& header); 00062 00063 /// Open a glf file for writing with the specified filename. 00064 /// \param filename glf file to open for writing. 00065 /// \param compressed whether or not to compress the file, defaults to true 00066 /// \return true = success; false = failure. 00067 bool openForWrite(const char * filename, bool compressed = true); 00068 00069 /// Close the file if there is one open, adding an end marker record 00070 /// if there is a previous section and one has not already been written. 00071 void close(); 00072 00073 /// Returns whether or not the end of the file has been reached. 00074 /// \return true = EOF; false = not eof. 00075 /// If the file is not open, true is returned. 00076 bool isEOF(); 00077 00078 /// Reads the header section from the file and stores it in 00079 /// the passed in header. 00080 /// \param header header object to populate with the file's glf header. 00081 /// \return true = success; false = failure. 00082 bool readHeader(GlfHeader& header); 00083 00084 /// Writes the specified header into the file. 00085 /// \param header header object to write into the file. 00086 /// \return true = success; false = failure. 00087 bool writeHeader(GlfHeader& header); 00088 00089 /// Gets the next reference section from the file & stores it in the 00090 /// passed in section, consuming records until a new section is found. 00091 /// \param refSection object to populate with the file's next reference 00092 /// section. 00093 /// \return true = section was successfully set. 00094 /// false = section was not successfully set. 00095 bool getNextRefSection(GlfRefSection& refSection); 00096 00097 /// Write the reference section to the file, adding an end marker record 00098 /// if there is a previous section and one has not already been written. 00099 /// \param refSection reference section to write to the file. 00100 /// \return true = succes; false = failure. 00101 bool writeRefSection(const GlfRefSection& refSection); 00102 00103 /// Gets the nextrecord from the file & stores it in the 00104 /// passed in record. 00105 /// \param record object to populate with the file's next record. 00106 /// \return true = record was successfully set. 00107 /// false = record not successfully set or for the endMarker record. 00108 bool getNextRecord(GlfRecord& record); 00109 00110 /// Writes the specified record into the file. 00111 /// \param record record to write to the file. 00112 /// \return true = success; false = failure. 00113 bool writeRecord(const GlfRecord& record); 00114 00115 /// Return the number of records that have been read/written so far. 00116 /// \return number of records that have been read/written so far. 00117 uint32_t getCurrentRecordCount(); 00118 00119 /// Get the Status of the last call that sets status. 00120 /// To remain backwards compatable - will be removed later. 00121 inline GlfStatus::Status getFailure() 00122 { 00123 return(getStatus()); 00124 } 00125 00126 /// Get the Status of the last call that sets status. 00127 /// \return status of the last method that sets a status. 00128 inline GlfStatus::Status getStatus() 00129 { 00130 return(myStatus.getStatus()); 00131 } 00132 00133 /// Get the Status of the last call that sets status. 00134 /// \return status message of the last method that sets a status. 00135 inline const char* getStatusMessage() 00136 { 00137 return(myStatus.getStatusMessage()); 00138 } 00139 00140 private: 00141 /// reset this file including all its attributes. 00142 void resetFile(); 00143 00144 /// Pointer to the file 00145 IFILE myFilePtr; 00146 00147 /// Flag to indicate if a file is open for reading. 00148 bool myIsOpenForRead; 00149 /// Flag to indicate if a file is open for writing. 00150 bool myIsOpenForWrite; 00151 00152 /// End marker that is inserted when writing files if a new section 00153 /// is specified without one or if the file is closed without writing 00154 /// an endMarker. 00155 GlfRecord myEndMarker; 00156 00157 /// Track the state of this file as to what it is expecting to read next. 00158 enum EXPECTED_SECTION 00159 { 00160 HEADER, 00161 REF_SECTION, 00162 RECORD 00163 } myNextSection; 00164 00165 /// Keep count of the number of records that have been read/written so far. 00166 uint32_t myRecordCount; 00167 00168 /// The status of the last GlfFile command. 00169 GlfStatus myStatus; 00170 }; 00171 00172 00173 class GlfFileReader : public GlfFile 00174 { 00175 public: 00176 00177 /// Default Constructor. 00178 GlfFileReader(); 00179 00180 /// Constructor that opens the specified file for read. 00181 /// \param filename file to open for reading. 00182 GlfFileReader(const char* filename); 00183 00184 virtual ~GlfFileReader(); 00185 }; 00186 00187 00188 class GlfFileWriter : public GlfFile 00189 { 00190 public: 00191 /// Default Constructor. 00192 GlfFileWriter(); 00193 00194 /// Constructor that opens the specified file for write. 00195 /// \param filename file to open for writing. 00196 GlfFileWriter(const char* filename); 00197 00198 virtual ~GlfFileWriter(); 00199 }; 00200 00201 #endif